Literature DB >> 24370961

QTL mapping for salt tolerance and domestication-related traits in Vigna marina subsp. oblonga, a halophytic species.

Sompong Chankaew1, Takehisa Isemura, Ken Naito, Eri Ogiso-Tanaka, Norihiko Tomooka, Prakit Somta, Akito Kaga, Duncan A Vaughan, Peerasak Srinives.   

Abstract

QTL mapping in F2 population [V. luteola × V. marina subsp. oblonga] revealed that the salt tolerance in V. marina subsp. oblonga is controlled by a single major QTL. The habitats of beach cowpea (Vigna marina) are sandy beaches in tropical and subtropical regions. As a species that grows closest to the sea, it has potential to be a gene source for breeding salt-tolerant crops. We reported here for the first time, quantitative trait loci (QTLs) mapping for salt tolerance in V. marina. A genetic linkage map was constructed from an F2 population of 120 plants derived from an interspecific cross between V. luteola and V. marina subsp. oblonga. The map comprised 150 SSR markers. The markers were clustered into 11 linkage groups spanning 777.6 cM in length with a mean distance between the adjacent markers of 5.59 cM. The F2:3 population was evaluated for salt tolerance under hydroponic conditions at the seedling and developmental stages. Segregation analysis indicated that salt tolerance in V. marina is controlled by a few genes. Multiple interval mapping consistently identified one major QTL which can explain about 50% of phenotypic variance. The flanking markers may facilitate transfer of the salt tolerance allele from V. marina subsp. oblonga into related Vigna crops. The QTL for domestication-related traits from V. marina are also discussed.

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Year:  2013        PMID: 24370961     DOI: 10.1007/s00122-013-2251-1

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN: 0040-5752            Impact factor:   5.699


  20 in total

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Authors:  Víctor Quesada; Santiago García-Martínez; Pedro Piqueras; María Rosa Ponce; José Luis Micol
Journal:  Plant Physiol       Date:  2002-10       Impact factor: 8.340

2.  Development of a genome-wide anchored microsatellite map for common bean (Phaseolus vulgaris L.).

Authors:  M W Blair; F Pedraza; H F Buendia; E Gaitán-Solís; S E Beebe; P Gepts; J Tohme
Journal:  Theor Appl Genet       Date:  2003-09-20       Impact factor: 5.699

3.  An SSR-based linkage map of yardlong bean (Vigna unguiculata (L.) Walp. subsp. unguiculata Sesquipedalis Group) and QTL analysis of pod length.

Authors:  Alisa Kongjaimun; Akito Kaga; Norihiko Tomooka; Prakit Somta; Takehiko Shimizu; Yujian Shu; Takehisa Isemura; Duncan A Vaughan; Peerasak Srinives
Journal:  Genome       Date:  2012-01-13       Impact factor: 2.166

4.  Identification of a major QTL allele from wild soybean (Glycine soja Sieb. & Zucc.) for increasing alkaline salt tolerance in soybean.

Authors:  D D Tuyen; S K Lal; D H Xu
Journal:  Theor Appl Genet       Date:  2010-03-05       Impact factor: 5.699

5.  A genetic linkage map for azuki bean [Vigna angularis (Willd.) Ohwi & Ohashi].

Authors:  O K Han; A Kaga; T Isemura; X W Wang; N Tomooka; D A Vaughan
Journal:  Theor Appl Genet       Date:  2005-11-15       Impact factor: 5.699

Review 6.  Salinity tolerance in halophytes.

Authors:  Timothy J Flowers; Timothy D Colmer
Journal:  New Phytol       Date:  2008-06-28       Impact factor: 10.151

7.  The development of SSR markers by a new method in plants and their application to gene flow studies in azuki bean [Vigna angularis (Willd.) Ohwi & Ohashi].

Authors:  X W Wang; A Kaga; N Tomooka; D A Vaughan
Journal:  Theor Appl Genet       Date:  2004-03-10       Impact factor: 5.699

8.  A major QTL conditioning salt tolerance in S-100 soybean and descendent cultivars.

Authors:  G J Lee; T E Carter; M R Villagarcia; Z Li; X Zhou; M O Gibbs; H R Boerma
Journal:  Theor Appl Genet       Date:  2004-09-09       Impact factor: 5.699

9.  The genetics of domestication of the azuki bean (Vigna angularis).

Authors:  Akito Kaga; Takehisa Isemura; Norihiko Tomooka; Duncan A Vaughan
Journal:  Genetics       Date:  2008-02-01       Impact factor: 4.562

10.  Characterization of microsatellites and gene contents from genome shotgun sequences of mungbean (Vigna radiata (L.) Wilczek).

Authors:  Sithichoke Tangphatsornruang; Prakit Somta; Pichahpuk Uthaipaisanwong; Juntima Chanprasert; Duangjai Sangsrakru; Worapa Seehalak; Warunee Sommanas; Somvong Tragoonrung; Peerasak Srinives
Journal:  BMC Plant Biol       Date:  2009-11-24       Impact factor: 4.215

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Review 1.  Neglected treasures in the wild - legume wild relatives in food security and human health.

Authors:  Hengyou Zhang; Farida Yasmin; Bao-Hua Song
Journal:  Curr Opin Plant Biol       Date:  2019-05-11       Impact factor: 7.834

Review 2.  Salinity stress response and 'omics' approaches for improving salinity stress tolerance in major grain legumes.

Authors:  Uday Chand Jha; Abhishek Bohra; Rintu Jha; Swarup Kumar Parida
Journal:  Plant Cell Rep       Date:  2019-01-12       Impact factor: 4.570

3.  Construction of an SSR and RAD-Marker Based Molecular Linkage Map of Vigna vexillata (L.) A. Rich.

Authors:  Rusama Marubodee; Eri Ogiso-Tanaka; Takehisa Isemura; Sompong Chankaew; Akito Kaga; Ken Naito; Hiroshi Ehara; Norihiko Tomooka
Journal:  PLoS One       Date:  2015-09-23       Impact factor: 3.240

4.  Diversity and Evolution of Salt Tolerance in the Genus Vigna.

Authors:  Kohtaro Iseki; Yu Takahashi; Chiaki Muto; Ken Naito; Norihiko Tomooka
Journal:  PLoS One       Date:  2016-10-13       Impact factor: 3.240

5.  VigSatDB: genome-wide microsatellite DNA marker database of three species of Vigna for germplasm characterization and improvement.

Authors:  Rahul Singh Jasrotia; Pramod Kumar Yadav; Mir Asif Iquebal; S B Bhatt; Vasu Arora; U B Angadi; Rukam Singh Tomar; Sarika Jaiswal; Anil Rai; Dinesh Kumar
Journal:  Database (Oxford)       Date:  2019-01-01       Impact factor: 3.451

6.  Whole genome sequencing data of Vigna nakashimae var. Ukushima and G418.

Authors:  Eri Ogiso-Tanaka; Sompong Chankaew; Takehisa Isemura; Alisa Kongjaimun; Akiko Baba; Ken Naito; Akito Kaga; Norihiko Tomooka
Journal:  Data Brief       Date:  2020-01-14

Review 7.  Revisiting the Domestication Process of African Vigna Species (Fabaceae): Background, Perspectives and Challenges.

Authors:  Davide Panzeri; Werther Guidi Nissim; Massimo Labra; Fabrizio Grassi
Journal:  Plants (Basel)       Date:  2022-02-16

8.  Novel Genetic Resources in the Genus Vigna Unveiled from Gene Bank Accessions.

Authors:  Yu Takahashi; Prakit Somta; Chiaki Muto; Kohtaro Iseki; Ken Naito; Muthaiyan Pandiyan; Senthil Natesan; Norihiko Tomooka
Journal:  PLoS One       Date:  2016-01-22       Impact factor: 3.240

9.  A Homoploid Hybrid Between Wild Vigna Species Found in a Limestone Karst.

Authors:  Yu Takahashi; Kohtaro Iseki; Kumiko Kitazawa; Chiaki Muto; Prakit Somta; Kenji Irie; Ken Naito; Norihiko Tomooka
Journal:  Front Plant Sci       Date:  2015-12-01       Impact factor: 5.753

Review 10.  Salinity and High Temperature Tolerance in Mungbean [Vigna radiata (L.) Wilczek] from a Physiological Perspective.

Authors:  Bindumadhava HanumanthaRao; Ramakrishnan M Nair; Harsh Nayyar
Journal:  Front Plant Sci       Date:  2016-06-29       Impact factor: 5.753

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