Literature DB >> 24368329

Characterization and expression analysis of WOX5 genes from wheat and its relatives.

Shan Zhao1, Qian-Tao Jiang1, Jian Ma1, Xiao-Wei Zhang1, Quan-Zhi Zhao1, Xiu-Ying Wang1, Chang-Shui Wang1, Xue Cao1, Zhen-Xiang Lu2, You-Liang Zheng3, Yu-Ming Wei4.   

Abstract

The WUSCHEL (WUS)-related homeobox (WOX) gene family plays an important role in coordinating gene transcription in the early phases of embryogenesis. In this study, we isolated and characterized WOX5 from common wheat and its relatives Triticum monococcum, Triticum urartu, Aegilops speltoides, Aegilops searsii, Aegilops sharonensis, Aegilops longissima, Aegilops bicornis, Aegilops tauschii, and Triticum turgidum. The size of the characterized WOX5 alleles ranged from 1029 to 1038 bp and encompassed the complete open reading frame (ORF) as well as 5' upstream and 3' downstream sequences. Domain prediction analysis showed that the putative primary structures of wheat WOX5 protein include the highly conserved homeodomain besides the WUS-box domain and the EAR-like domain, which is/are present in some members of the WOX protein family. The full-length ORF was subcloned into a prokaryotic expression vector pET30a, and an approximate 26-kDa protein was successfully expressed in Escherichia coli BL21 (DE3) cells with IPTG induction. The WOX5 genes from wheat-related species exhibit a similar structure to and high sequence similarity with WOX5 genes from common wheat. The degree of divergence and phylogenetic tree analysis among WOX5 alleles suggested the existence of three homoeologous copies in the A, B, or D genome of common wheat. Quantitative PCR results showed that TaWOX5 was primarily expressed in the root and calli induced by auxin and cytokinin, indicating that TaWOX5 may play a role related to root formation or development and is associated with hormone regulation in somatic embryogenesis. Crown
Copyright © 2013. Published by Elsevier B.V. All rights reserved.

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Keywords:  1-naphthoxyacetic acid; 2,4-D; 2,4-dichlorophenoxyacetic acid; 6-BA; 6-benzyl-adenine; AP; BLAST; CDA; CIA; CTAB; EAR; EC; ERF-associated amphiphilic repression; Expression; HD; IAA; IPTG; MS; NAA; NEC; NJ; ORF; PAGE; Phylogenetic analysis; QHB; RAM; RT-qPCR; Real-time quantitative PCR; SAM; SDS; SNPs; TAIL-PCR; USDA-ARS; UTR; United States Department of Agriculture—Agricultural Research Service; WOX; WOX5; WUS; WUS-related homeobox; Wheat; Wuschel; adaptor primer; basic local alignment search tool; callus in differentiation medium after days; callus in induced medium after days; cetyltrimethyl ammonium bromide; embryogenic callus; homeodomain; indole-3-acetic acid; isopropyl β-d-thiogalactopyranoside; murashige and skoog medium; neighbor-joining; non-embryogenic callus; open reading frame; polyacrylamide gel electrophoresis; quiescent center-specific homeobox; real-time quantitative PCR; root apical meristem; shoot apical meristem; single nucleotide polymorphism; sodium dodecyl sulfate; thermal asymmetric interlaced PCR; untranslated transcribed region

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Year:  2013        PMID: 24368329     DOI: 10.1016/j.gene.2013.12.022

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  7 in total

1.  Genome-Wide Identification and Comparative Analysis of WOX Genes in Four Euphorbiaceae Species and Their Expression Patterns in Jatropha curcas.

Authors:  Zhanjun Wang; Qianwen Cai; Haimeng Xia; Bingqing Han; Minhui Li; Yue Wang; Minhui Zhu; Chunyan Jiao; Dandan Wang; Junjie Zhu; Wenya Yuan; Di Zhu; Congcong Xu; Hongyan Wang; Minghui Zhou; Xie Zhang; Jisen Shi; Jinhui Chen
Journal:  Front Genet       Date:  2022-06-30       Impact factor: 4.772

2.  Large-scale phylogenomic analysis suggests three ancient superclades of the WUSCHEL-RELATED HOMEOBOX transcription factor family in plants.

Authors:  Cheng-Chiang Wu; Fay-Wei Li; Elena M Kramer
Journal:  PLoS One       Date:  2019-10-11       Impact factor: 3.240

3.  Genome-wide characterization and expression and co-expression analysis suggested diverse functions of WOX genes in bread wheat.

Authors:  Meenakshi Rathour; Alok Sharma; Amandeep Kaur; Santosh Kumar Upadhyay
Journal:  Heliyon       Date:  2020-12-29

4.  Osmotic stress-induced somatic embryo maturation of coffee Coffea arabica L., shoot and root apical meristems development and robustness.

Authors:  Eliana Valencia-Lozano; Jorge E Ibarra; Humberto Herrera-Ubaldo; Stefan De Folter; José L Cabrera-Ponce
Journal:  Sci Rep       Date:  2021-05-06       Impact factor: 4.379

5.  Genome-Wide Identification and Expression Profiling of the WOX Gene Family in Citrus sinensis and Functional Analysis of a CsWUS Member.

Authors:  Faiza Shafique Khan; Ren-Fang Zeng; Zhi-Meng Gan; Jin-Zhi Zhang; Chun-Gen Hu
Journal:  Int J Mol Sci       Date:  2021-05-06       Impact factor: 5.923

Review 6.  Function and regulation of transcription factors involved in root apical meristem and stem cell maintenance.

Authors:  Rebecca C Drisch; Yvonne Stahl
Journal:  Front Plant Sci       Date:  2015-07-06       Impact factor: 5.753

7.  Identification of the WUSCHEL-Related Homeobox (WOX) Gene Family, and Interaction and Functional Analysis of TaWOX9 and TaWUS in Wheat.

Authors:  Zheng Li; Dan Liu; Yu Xia; Ziliang Li; Doudou Jing; Jingjing Du; Na Niu; Shoucai Ma; Junwei Wang; Yulong Song; Zhiquan Yang; Gaisheng Zhang
Journal:  Int J Mol Sci       Date:  2020-02-26       Impact factor: 5.923

  7 in total

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