Literature DB >> 24364741

Systematic investigations of different cytosine modifications on CpG dinucleotide sequences: the effects on the B-Z transition.

Shaoru Wang1, Yuelin Long, Jiaqi Wang, Yushu Ge, Pu Guo, Yi Liu, Tian Tian, Xiang Zhou.   

Abstract

We have first demonstrated the distinctive effects of three newly reported epigenetic modifications, including 5hmC, 5fC, and 5caC, on B-Z transition of CpG dinucleotide DNAs. We have performed detailed assays and compared their effects. We further studied the regulation of B-Z transition of CpG dinucleotide dodecamers by alternating oxidation and alternating reduction.

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Year:  2013        PMID: 24364741     DOI: 10.1021/ja4107012

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  8 in total

1.  C/EBPβ (CEBPB) protein binding to the C/EBP|CRE DNA 8-mer TTGC|GTCA is inhibited by 5hmC and enhanced by 5mC, 5fC, and 5caC in the CG dinucleotide.

Authors:  Syed Khund Sayeed; Jianfei Zhao; Bangalore K Sathyanarayana; Jaya Prakash Golla; Charles Vinson
Journal:  Biochim Biophys Acta       Date:  2015-03-13

2.  1H NMR Chemical Exchange Techniques Reveal Local and Global Effects of Oxidized Cytosine Derivatives.

Authors:  Romeo C A Dubini; Eva Korytiaková; Thea Schinkel; Pia Heinrichs; Thomas Carell; Petra Rovó
Journal:  ACS Phys Chem Au       Date:  2022-02-11

3.  Lanthanum induced B-to-Z transition in self-assembled Y-shaped branched DNA structure.

Authors:  Ashok K Nayak; Aseem Mishra; Bhabani S Jena; Barada K Mishra; Umakanta Subudhi
Journal:  Sci Rep       Date:  2016-05-31       Impact factor: 4.379

4.  Gene specific-loci quantitative and single-base resolution analysis of 5-formylcytosine by compound-mediated polymerase chain reaction.

Authors:  Yafen Wang; Chaoxing Liu; Xiong Zhang; Wei Yang; Fan Wu; Guangrong Zou; Xiaocheng Weng; Xiang Zhou
Journal:  Chem Sci       Date:  2018-03-19       Impact factor: 9.825

5.  Thymine DNA glycosylase recognizes the geometry alteration of minor grooves induced by 5-formylcytosine and 5-carboxylcytosine.

Authors:  Tianran Fu; Liping Liu; Qing-Lin Yang; Yuxin Wang; Pan Xu; Lin Zhang; Shien Liu; Qing Dai; Quanjiang Ji; Guo-Liang Xu; Chuan He; Cheng Luo; Liang Zhang
Journal:  Chem Sci       Date:  2019-06-27       Impact factor: 9.825

6.  Praseodymium promotes B-Z transition in self-assembled DNA nanostructures.

Authors:  Madhabi M Bhanjadeo; Umakanta Subudhi
Journal:  RSC Adv       Date:  2019-02-06       Impact factor: 4.036

7.  DNA Bending Force Facilitates Z-DNA Formation under Physiological Salt Conditions.

Authors:  Jaehun Yi; Sanghun Yeou; Nam Ki Lee
Journal:  J Am Chem Soc       Date:  2022-07-15       Impact factor: 16.383

8.  Fluorogenic labeling and single-base resolution analysis of 5-formylcytosine in DNA.

Authors:  Chaoxing Liu; Yafen Wang; Wei Yang; Fan Wu; Weiwu Zeng; Zonggui Chen; Jinguo Huang; Guangrong Zou; Xiong Zhang; Shaoru Wang; Xiaocheng Weng; Zhiguo Wu; Yu Zhou; Xiang Zhou
Journal:  Chem Sci       Date:  2017-09-04       Impact factor: 9.825

  8 in total

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