Literature DB >> 24363455

Case-Study Investigation of Equine Maternity via PCR-RFLP: A Biochemistry Laboratory Experiment.

Julie T Millard1, Edward Chuang1, James S Lucas1, Erzsebet E Nagy1, Griffin T Davis1.   

Abstract

A simple and robust biochemistry laboratory experiment is described that uses restriction fragment length polymorphism (RFLP) of polymerase chain reaction (PCR) products to verify the identity of a potentially valuable horse. During the first laboratory period, students purify DNA from equine samples and amplify two loci of mitochondrial DNA. During the second laboratory period, students digest PCR products with restriction enzymes and analyze the fragment sizes through agarose gel electrophoresis. An optional step of validating DNA extracts through realtime PCR can expand the experiment to three weeks. This experiment, which has an engaging and versatile scenario, provides students with exposure to key principles and techniques of molecular biology, bioinformatics, and evolution in a forensic context.

Entities:  

Keywords:  Bioanalytical Chemistry; Biochemistry; Collaborative/Cooperative Learning; Forensic chemistry; Hands-On Learning/Manipulatives; Laboratory Instruction; Nucleic Acids/DNA/RNA; Upper-division undergraduate

Year:  2013        PMID: 24363455      PMCID: PMC3867210          DOI: 10.1021/ed300740r

Source DB:  PubMed          Journal:  J Chem Educ        ISSN: 0021-9584            Impact factor:   2.979


  19 in total

1.  PCR-RFLP analysis of the cytochrome b gene in horse mitochondrial DNA.

Authors:  N Ishida; T Hasegawa; T Oyunsuren; H Mukoyama
Journal:  Anim Genet       Date:  1996-10       Impact factor: 3.169

2.  Substitution of human for horse urine disproves an accusation of doping*.

Authors:  Silvina Díaz; Mariana E Kienast; Egle E Villegas-Castagnasso; Natalia L Pena; Marcos M Manganare; Diego Posik; Pilar Peral-García; Guillermo Giovambattista
Journal:  J Forensic Sci       Date:  2008-07-10       Impact factor: 1.832

Review 3.  Forensic veterinary medicine: a rapidly evolving discipline.

Authors:  John E Cooper; Margaret E Cooper
Journal:  Forensic Sci Med Pathol       Date:  2008-05-20       Impact factor: 2.007

4.  The ethical implications of genetic testing in the classroom.

Authors:  Ann T S Taylor; Jill Cellars Rogers
Journal:  Biochem Mol Biol Educ       Date:  2011-07       Impact factor: 1.160

5.  Fly diversity revealed by PCR-RFLP of mitochondrial DNA.

Authors:  Jimmy F Asraoui; Nancy P Sayar; Khouzama M Knio; Colin A Smith
Journal:  Biochem Mol Biol Educ       Date:  2008-09       Impact factor: 1.160

6.  Identification of mtDNA lineages of Sus scrofa by multiplex single base extension for the authentication of processed food products.

Authors:  Barbara van Asch; Liliana Silva Santos; Joao Carneiro; Filipe Pereira; Antonio Amorim
Journal:  J Agric Food Chem       Date:  2011-06-21       Impact factor: 5.279

7.  Developing equine mtDNA profiling for forensic application.

Authors:  Susan M R Gurney; Sandra Schneider; René Pflugradt; Elizabeth Barrett; Anna Catharina Forster; Bernd Brinkmann; Thomas Jansen; Peter Forster
Journal:  Int J Legal Med       Date:  2010-09-10       Impact factor: 2.686

8.  PCR-RFLP analysis of mitochondrial DNA: a reliable method for species identification.

Authors:  C Wolf; J Rentsch; P Hübner
Journal:  J Agric Food Chem       Date:  1999-04       Impact factor: 5.279

9.  A pedigree-based study of mitochondrial D-loop DNA sequence variation among Arabian horses.

Authors:  A T Bowling; A Del Valle; M Bowling
Journal:  Anim Genet       Date:  2000-02       Impact factor: 3.169

10.  Differentiating among horse (Equus caballus), donkey (Equus asinus) and their hybrids with combined analysis of nuclear and mitochondrial gene polymorphism.

Authors:  C J Zhao; G C Han; Y H Qin; Ch Wu
Journal:  J Anim Breed Genet       Date:  2005-08       Impact factor: 2.380

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  1 in total

1.  Inquiry-based experiments for large-scale introduction to PCR and restriction enzyme digests.

Authors:  Kelly E Johanson; Terry J Watt
Journal:  Biochem Mol Biol Educ       Date:  2015-10-26       Impact factor: 1.160

  1 in total

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