Literature DB >> 24359934

Application of a non-amplification-based technology to detect invasive fungal pathogens.

Joe L Hsu1, Jon Binkley2, Karl V Clemons3, David A Stevens3, Mark R Nicolls4, Mark Holodniy5.   

Abstract

Current diagnostic techniques for fungal diseases could be improved with respect to sensitivity, specificity, and timeliness. To address this clinical need, we adapted a non-amplification-based nucleic acid detection technology to identify fungal pathogens. We demonstrate a high-specificity, detection sensitivity, reproducibility, and multiplex capacity for detecting fungal strains.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Aspergillus; Candida; Diagnosis; Invasive fungal disease; nCounter analysis system

Mesh:

Year:  2013        PMID: 24359934      PMCID: PMC4583138          DOI: 10.1016/j.diagmicrobio.2013.11.013

Source DB:  PubMed          Journal:  Diagn Microbiol Infect Dis        ISSN: 0732-8893            Impact factor:   2.803


  7 in total

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Authors:  Ilan Wapinski; Avi Pfeffer; Nir Friedman; Aviv Regev
Journal:  Bioinformatics       Date:  2007-07-01       Impact factor: 6.937

2.  Direct multiplexed measurement of gene expression with color-coded probe pairs.

Authors:  Gary K Geiss; Roger E Bumgarner; Brian Birditt; Timothy Dahl; Naeem Dowidar; Dwayne L Dunaway; H Perry Fell; Sean Ferree; Renee D George; Tammy Grogan; Jeffrey J James; Malini Maysuria; Jeffrey D Mitton; Paola Oliveri; Jennifer L Osborn; Tao Peng; Amber L Ratcliffe; Philippa J Webster; Eric H Davidson; Leroy Hood; Krassen Dimitrov
Journal:  Nat Biotechnol       Date:  2008-02-17       Impact factor: 54.908

Review 3.  Diagnosing invasive fungal disease in critically ill patients.

Authors:  Joe L Hsu; Stephen J Ruoss; Natalie D Bower; Margaret Lin; Mark Holodniy; David A Stevens
Journal:  Crit Rev Microbiol       Date:  2011-07-13       Impact factor: 7.624

4.  RNA signatures allow rapid identification of pathogens and antibiotic susceptibilities.

Authors:  Amy K Barczak; James E Gomez; Benjamin B Kaufmann; Ella R Hinson; Lisa Cosimi; Mark L Borowsky; Andrew B Onderdonk; Sarah A Stanley; Devinder Kaur; Kevin F Bryant; David M Knipe; Alexander Sloutsky; Deborah T Hung
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-02       Impact factor: 11.205

5.  Correlation of restriction fragment length polymorphism genotyping with internal transcribed spacer sequence, randomly amplified polymorphic DNA and multilocus sequence groupings for Candida parapsilosis.

Authors:  Eveline C van Asbeck; Karl V Clemons; Angela N Markham; David A Stevens
Journal:  Mycoses       Date:  2009-01-24       Impact factor: 4.377

6.  The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources.

Authors:  Martha B Arnaud; Gustavo C Cerqueira; Diane O Inglis; Marek S Skrzypek; Jonathan Binkley; Marcus C Chibucos; Jonathan Crabtree; Clinton Howarth; Joshua Orvis; Prachi Shah; Farrell Wymore; Gail Binkley; Stuart R Miyasato; Matt Simison; Gavin Sherlock; Jennifer R Wortman
Journal:  Nucleic Acids Res       Date:  2011-11-12       Impact factor: 16.971

7.  Epstein-barr virus infected gastric adenocarcinoma expresses latent and lytic viral transcripts and has a distinct human gene expression profile.

Authors:  Weihua Tang; Douglas R Morgan; Michael O Meyers; Ricardo L Dominguez; Enrique Martinez; Kennichi Kakudo; Pei Fen Kuan; Natalie Banet; Hind Muallem; Kimberly Woodward; Olga Speck; Margaret L Gulley
Journal:  Infect Agent Cancer       Date:  2012-08-28       Impact factor: 2.965

  7 in total
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Authors:  Allen T Griffin; Kimberly E Hanson
Journal:  Curr Infect Dis Rep       Date:  2014-08       Impact factor: 3.725

2.  Targeted Treatment for Bacterial Infections: Prospects for Pathogen-Specific Antibiotics Coupled with Rapid Diagnostics.

Authors:  Tucker Maxson; Douglas A Mitchell
Journal:  Tetrahedron       Date:  2015-10-09       Impact factor: 2.457

  2 in total

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