Literature DB >> 24359379

Identification of structure in condensed matter with the topological cluster classification.

Alex Malins1, Stephen R Williams2, Jens Eggers3, C Patrick Royall4.   

Abstract

We describe the topological cluster classification (TCC) algorithm. The TCC detects local structures with bond topologies similar to isolated clusters which minimise the potential energy for a number of monatomic and binary simple liquids with m ≤ 13 particles. We detail a modified Voronoi bond detection method that optimizes the cluster detection. The method to identify each cluster is outlined, and a test example of Lennard-Jones liquid and crystal phases is considered and critically examined.

Year:  2013        PMID: 24359379     DOI: 10.1063/1.4832897

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  7 in total

1.  Structural-dynamical transition in the Wahnström mixture.

Authors:  Francesco Turci; Thomas Speck; C Patrick Royall
Journal:  Eur Phys J E Soft Matter       Date:  2018-04-26       Impact factor: 1.890

2.  Vibrational scaling of the heterogeneous dynamics detected by mutual information.

Authors:  Antonio Tripodo; Francesco Puosi; Marco Malvaldi; Dino Leporini
Journal:  Eur Phys J E Soft Matter       Date:  2019-11-22       Impact factor: 1.890

3.  Dynamic phase coexistence in glass-forming liquids.

Authors:  Raffaele Pastore; Antonio Coniglio; Massimo Pica Ciamarra
Journal:  Sci Rep       Date:  2015-07-09       Impact factor: 4.379

4.  The role of fivefold symmetry in suppressing crystallization.

Authors:  Jade Taffs; C Patrick Royall
Journal:  Nat Commun       Date:  2016-10-25       Impact factor: 14.919

5.  Local structure in deeply supercooled liquids exhibits growing lengthscales and dynamical correlations.

Authors:  James E Hallett; Francesco Turci; C Patrick Royall
Journal:  Nat Commun       Date:  2018-08-16       Impact factor: 14.919

6.  Simu-D: A Simulator-Descriptor Suite for Polymer-Based Systems under Extreme Conditions.

Authors:  Miguel Herranz; Daniel Martínez-Fernández; Pablo Miguel Ramos; Katerina Foteinopoulou; Nikos Ch Karayiannis; Manuel Laso
Journal:  Int J Mol Sci       Date:  2021-11-18       Impact factor: 5.923

7.  Crystallisation and polymorph selection in active Brownian particles.

Authors:  Fergus J Moore; C Patrick Royall; Tanniemola B Liverpool; John Russo
Journal:  Eur Phys J E Soft Matter       Date:  2021-09-28       Impact factor: 1.890

  7 in total

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