Literature DB >> 24356583

APEX (Aqueous Photochemistry of Environmentally occurring Xenobiotics): a free software tool to predict the kinetics of photochemical processes in surface waters.

Marco Bodrato1, Davide Vione.   

Abstract

The APEX software predicts the photochemical transformation kinetics of xenobiotics in surface waters as a function of: photoreactivity parameters (direct photolysis quantum yield and second-order reaction rate constants with transient species, namely ˙OH, CO₃(-)˙, (1)O₂ and the triplet states of chromophoric dissolved organic matter, (3)CDOM*), water chemistry (nitrate, nitrite, bicarbonate, carbonate, bromide and dissolved organic carbon, DOC), and water depth (more specifically, the optical path length of sunlight in water). It applies to well-mixed surface water layers, including the epilimnion of stratified lakes, and the output data are average values over the considered water column. Based on intermediate formation yields from the parent compound via the different photochemical pathways, the software can also predict intermediate formation kinetics and overall yield. APEX is based on a photochemical model that has been validated against available field data of pollutant phototransformation, with good agreement between model predictions and field results. The APEX software makes allowance for different levels of knowledge of a photochemical system. For instance, the absorption spectrum of surface water can be used if known, or otherwise it can be modelled from the values of DOC. Also the direct photolysis quantum yield can be entered as a detailed wavelength trend, as a single value (constant or average), or it can be defined as a variable if unknown. APEX is based on the free software Octave. Additional applications are provided within APEX to assess the σ-level uncertainty of the results and the seasonal trend of photochemical processes.

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Year:  2014        PMID: 24356583     DOI: 10.1039/c3em00541k

Source DB:  PubMed          Journal:  Environ Sci Process Impacts        ISSN: 2050-7887            Impact factor:   4.238


  12 in total

1.  Pesticide behavior in modified water-sediment systems.

Authors:  Toshiyuki Katagi
Journal:  J Pestic Sci       Date:  2016-11-20       Impact factor: 1.519

2.  Environmental effects of ozone depletion, UV radiation and interactions with climate change: UNEP Environmental Effects Assessment Panel, update 2017.

Authors:  A F Bais; R M Lucas; J F Bornman; C E Williamson; B Sulzberger; A T Austin; S R Wilson; A L Andrady; G Bernhard; R L McKenzie; P J Aucamp; S Madronich; R E Neale; S Yazar; A R Young; F R de Gruijl; M Norval; Y Takizawa; P W Barnes; T M Robson; S A Robinson; C L Ballaré; S D Flint; P J Neale; S Hylander; K C Rose; S-Å Wängberg; D-P Häder; R C Worrest; R G Zepp; N D Paul; R M Cory; K R Solomon; J Longstreth; K K Pandey; H H Redhwi; A Torikai; A M Heikkilä
Journal:  Photochem Photobiol Sci       Date:  2018-02-14       Impact factor: 3.982

3.  Aqueous multivariate phototransformation kinetics of dissociated tetracycline: implications for the photochemical fate in surface waters.

Authors:  Linke Ge; Qianqian Dong; Crispin Halsall; Chang-Er L Chen; Jun Li; Degao Wang; Peng Zhang; Ziwei Yao
Journal:  Environ Sci Pollut Res Int       Date:  2018-03-25       Impact factor: 4.223

4.  Solar UV radiation in a changing world: roles of cryosphere-land-water-atmosphere interfaces in global biogeochemical cycles.

Authors:  B Sulzberger; A T Austin; R M Cory; R G Zepp; N D Paul
Journal:  Photochem Photobiol Sci       Date:  2019-02-27       Impact factor: 3.982

5.  Photolysis of pharmaceuticals and personal care products in the marine environment under simulated sunlight conditions: irradiation and identification.

Authors:  Aasim Musa Mohamed Ali; Roland Kallenborn; Leiv Kristen Sydnes; Helene Thorsen Rønning; Walied Mohamed Alarif; Sultan Al-Lihaibi
Journal:  Environ Sci Pollut Res Int       Date:  2017-04-28       Impact factor: 4.223

Review 6.  Sunlight-mediated inactivation of health-relevant microorganisms in water: a review of mechanisms and modeling approaches.

Authors:  Kara L Nelson; Alexandria B Boehm; Robert J Davies-Colley; Michael C Dodd; Tamar Kohn; Karl G Linden; Yuanyuan Liu; Peter A Maraccini; Kristopher McNeill; William A Mitch; Thanh H Nguyen; Kimberly M Parker; Roberto A Rodriguez; Lauren M Sassoubre; Andrea I Silverman; Krista R Wigginton; Richard G Zepp
Journal:  Environ Sci Process Impacts       Date:  2018-08-16       Impact factor: 4.238

Review 7.  A Critical View of the Application of the APEX Software (Aqueous Photochemistry of Environmentally-Occurring Xenobiotics) to Predict Photoreaction Kinetics in Surface Freshwaters.

Authors:  Davide Vione
Journal:  Molecules       Date:  2019-12-18       Impact factor: 4.411

8.  Prioritizing Direct Photolysis Products Predicted by the Chemical Transformation Simulator: Relative Reasoning and Absolute Ranking.

Authors:  Chenyi Yuan; Caroline Tebes-Stevens; Eric J Weber
Journal:  Environ Sci Technol       Date:  2021-04-21       Impact factor: 9.028

9.  Possible Effect of Climate Change on Surface-Water Photochemistry: A Model Assessment of the Impact of Browning on the Photodegradation of Pollutants in Lakes during Summer Stratification. Epilimnion vs. Whole-Lake Phototransformation.

Authors:  Federico Calderaro; Davide Vione
Journal:  Molecules       Date:  2020-06-17       Impact factor: 4.411

Review 10.  Solar Water Disinfection to Produce Safe Drinking Water: A Review of Parameters, Enhancements, and Modelling Approaches to Make SODIS Faster and Safer.

Authors:  Ángela García-Gil; Rafael A García-Muñoz; Kevin G McGuigan; Javier Marugán
Journal:  Molecules       Date:  2021-06-05       Impact factor: 4.411

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