Literature DB >> 24354351

A mathematical model of the colon crypt capturing compositional dynamic interactions between cell types.

Kieran Smallbone1, Bernard M Corfe.   

Abstract

Models of the development and early progression of colorectal cancer are based upon understanding the cycle of stem cell turnover, proliferation, differentiation and death. Existing crypt compartmental models feature a linear pathway of cell types, with little regulatory mechanism. Previous work has shown that there are perturbations in the enteroendocrine cell population of macroscopically normal crypts, a compartment not included in existing models. We show that existing models do not adequately recapitulate the dynamics of cell fate pathways in the crypt. We report the progressive development, iterative testing and fitting of a developed compartmental model with additional cell types, and which includes feedback mechanisms and cross-regulatory mechanisms between cell types. The fitting of the model to existing data sets suggests a need to invoke cross-talk between cell types as a feature of colon crypt cycle models.
© 2013 The Authors. International Journal of Experimental Pathology © 2013 International Journal of Experimental Pathology.

Entities:  

Keywords:  apoptosis; cancer; cell cycle; cell-cell signalling; colon crypt; differentiation; mathematical model

Mesh:

Year:  2013        PMID: 24354351      PMCID: PMC3919643          DOI: 10.1111/iep.12062

Source DB:  PubMed          Journal:  Int J Exp Pathol        ISSN: 0959-9673            Impact factor:   1.925


  27 in total

Review 1.  Classification and functions of enteroendocrine cells of the lower gastrointestinal tract.

Authors:  Ashok R Gunawardene; Bernard M Corfe; Carolyn A Staton
Journal:  Int J Exp Pathol       Date:  2011-04-25       Impact factor: 1.925

2.  BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models.

Authors:  Chen Li; Marco Donizelli; Nicolas Rodriguez; Harish Dharuri; Lukas Endler; Vijayalakshmi Chelliah; Lu Li; Enuo He; Arnaud Henry; Melanie I Stefan; Jacky L Snoep; Michael Hucka; Nicolas Le Novère; Camille Laibe
Journal:  BMC Syst Biol       Date:  2010-06-29

Review 3.  Review article: the role of butyrate on colonic function.

Authors:  H M Hamer; D Jonkers; K Venema; S Vanhoutvin; F J Troost; R-J Brummer
Journal:  Aliment Pharmacol Ther       Date:  2007-10-25       Impact factor: 8.171

4.  Chromogranin A-, serotonin-, synaptophysin- and vascular endothelial growth factor-positive endocrine cells and the prognosis of colorectal cancer: an immunohistochemical and ultrastructural study.

Authors:  Maya Gulubova; Tatyana Vlaykova
Journal:  J Gastroenterol Hepatol       Date:  2008-09-01       Impact factor: 4.029

5.  Short-chain fatty acid level and field cancerization show opposing associations with enteroendocrine cell number and neuropilin expression in patients with colorectal adenoma.

Authors:  Danny C W Yu; Jonathan P Bury; James Tiernan; Jennifer S Waby; Carolyn A Staton; Bernard M Corfe
Journal:  Mol Cancer       Date:  2011-03-14       Impact factor: 27.401

6.  Modelling the spatio-temporal cell dynamics reveals novel insights on cell differentiation and proliferation in the small intestinal crypt.

Authors:  Carmen Pin; Alastair J M Watson; Simon R Carding
Journal:  PLoS One       Date:  2012-05-18       Impact factor: 3.240

7.  A comprehensive model of the spatio-temporal stem cell and tissue organisation in the intestinal crypt.

Authors:  Peter Buske; Jörg Galle; Nick Barker; Gabriela Aust; Hans Clevers; Markus Loeffler
Journal:  PLoS Comput Biol       Date:  2011-01-06       Impact factor: 4.475

8.  A two-dimensional model of the colonic crypt accounting for the role of the basement membrane and pericryptal fibroblast sheath.

Authors:  Sara-Jane Dunn; Paul L Appleton; Scott A Nelson; Inke S Näthke; David J Gavaghan; James M Osborne
Journal:  PLoS Comput Biol       Date:  2012-05-24       Impact factor: 4.475

9.  Decrease in intestinal endocrine cells in Balb/c mice with CT-26 carcinoma cells.

Authors:  Kwang-Ho Cho; Hyeung-Sik Lee; Sae-Kwang Ku
Journal:  J Vet Sci       Date:  2008-03       Impact factor: 1.672

10.  A study protocol to investigate the relationship between dietary fibre intake and fermentation, colon cell turnover, global protein acetylation and early carcinogenesis: the FACT study.

Authors:  Bernard M Corfe; Elizabeth A Williams; Jonathan P Bury; Stuart A Riley; Lisa J Croucher; Daphne Y L Lai; Caroline A Evans
Journal:  BMC Cancer       Date:  2009-09-18       Impact factor: 4.430

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  2 in total

1.  Three-Dimensional Spatiotemporal Modeling of Colon Cancer Organoids Reveals that Multimodal Control of Stem Cell Self-Renewal is a Critical Determinant of Size and Shape in Early Stages of Tumor Growth.

Authors:  Huaming Yan; Anna Konstorum; John S Lowengrub
Journal:  Bull Math Biol       Date:  2017-07-05       Impact factor: 1.758

2.  Data Driven Mathematical Model of Colon Cancer Progression.

Authors:  Arkadz Kirshtein; Shaya Akbarinejad; Wenrui Hao; Trang Le; Sumeyye Su; Rachel A Aronow; Leili Shahriyari
Journal:  J Clin Med       Date:  2020-12-05       Impact factor: 4.241

  2 in total

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