The molecular structures of axial and equatorial conformers of cyclo-C5H10SiHX (X = Cl, Br, I) as well as the thermodynamic equilibrium between these species was investigated by means of gas electron diffraction, dynamic nuclear magnetic resonance, temperature-dependent Raman spectroscopy, and quantum-chemical calculations applying CCSD(T), MP2, and DFT methods. According to the experimental and calculated results, all three compounds exist as a mixture of two chair conformers of the six-membered ring. The two chair forms of Cs symmetry differ in the axial or equatorial position of the X atom. In all cases, the axial conformer is preferred over the equatorial one. When the experimental uncertainties are taken into account, all of the experimental and theoretical results for the conformational energy (Eaxial - Eequatorial) fit into a remarkably narrow range of -0.50 ± 0.15 kcal mol-1. It was found by NBO analysis that the axial conformers are unfavorable in terms of steric energy and conjugation effects and that they are stabilized mainly by electrostatic interactions. The conformational energies for C6H11X and cyclo-C5H10SiHX (X = F, Cl, Br, I, At) were compared using CCSD(T) calculations. In both series, fluorine is predicted to have a lower conformational preference (cyclohexane equatorial, silacyclohexane axial) than Cl, Br, and I. It is predicted that astatine would behave very similarly to Cl, Br, and I within each series.
The molecular structures of axial and equatorial conformers of cyclo-C5H10SiHX (X = Cl, Br, I) as well as the thermodynamic equilibrium between these species was investigated by means of gas electron diffraction, dynamic nuclear magnetic resonance, temperature-dependent Raman spectroscopy, and quantum-chemical calculations applying CCSD(T), MP2, and DFT methods. According to the experimental and calculated results, all three compounds exist as a mixture of two chair conformers of the six-membered ring. The two chair forms of Cs symmetry differ in the axial or equatorial position of the X atom. In all cases, the axial conformer is preferred over the equatorial one. When the experimental uncertainties are taken into account, all of the experimental and theoretical results for the conformational energy (Eaxial - Eequatorial) fit into a remarkably narrow range of -0.50 ± 0.15 kcal mol-1. It was found by NBO analysis that the axial conformers are unfavorable in terms of steric energy and conjugation effects and that they are stabilized mainly by electrostatic interactions. The conformational energies for C6H11X and cyclo-C5H10SiHX (X = F, Cl, Br, I, At) were compared using CCSD(T) calculations. In both series, fluorine is predicted to have a lower conformational preference (cyclohexane equatorial, silacyclohexane axial) than Cl, Br, and I. It is predicted that astatine would behave very similarly to Cl, Br, and I within each series.
The stereochemistry
of cyclohexane (1) is among the
best-explored areas in organic stereochemistry.[2,3] The
chair-to-chair inversion in cyclohexane is well-understood, and the
Gibbs free energy of activation for the step chair → half-chair⧧ → twist is generally accepted to be 10.1–10.5
kcal mol–1. Far fewer investigations have been reported
on silicon-containing six-membered rings. In silacyclohexane (6), the activation energy is about one-half of the value for
cyclohexane.[4,5] The conformational equilibria
of a large number of monosubstituted cyclohexanes have been studied.
Winstein and Holness defined the A value as the thermodynamic
preference for the equatorial conformation over the axial one (see
Scheme 1 for the definition of A).[6] A positive A value
corresponds to a preference for the equatorial conformer, and ΔG = Gax – Geq > 0. All energy differences herein will be presented
as (axial – equatorial). As a rule, in monosubstituted cyclohexanes,
the substituent prefers the equatorial position of the chair conformation.
Rare exceptions are substituents having mercury bonded to the cyclohexane
ring. When the substituent becomes bulkier its equatorial preference
generally increases. The simplest alkyl groups (methyl, ethyl, isopropyl,
and tert-butyl) have been used as examples. This
tendency has in a classical way been ascribed to 1,3-syn-axial interactions
between the substituent in the axial position and axial hydrogens
on the ring carbon atoms at positions 3 and 5.[7] Toward the end of the last century, the accepted A values were 1.74, 1.79, 2.21, and 4.9 kcal mol–1 for Me, Et, i-Pr, and t-Bu, respectively.[8−10] Evidence questioning the model of 1,3-syn-axial interactions is
starting to appear. Wiberg et al.[11] revised
the A values for the three lightest alkyl groups
and reported values of 1.80, 1.75, and 1.96 kcal mol–1 for Me, Et, and i-Pr, respectively (all values
reported with the error limit of ±0.02 kcal mol–1), and the authors concluded that there was no evidence of 1,3-syn-axial
interactions with the axial hyrogens of C3 and C5. Taddei and Kleinpeter
examined the role of hyperconjugation in substituted cyclohexanes.[12,13] Using atoms in molecules (AIM) analysis, Cuevas and co-workers concluded
that the t-Bu group is more stable when it adopts
the axial position in cyclohexane but produces destabilization of
the cyclohexyl ring.[14] Clearly the conformational
preferences in monosubstituted cyclohexanes are not fully understood.
In recent years, A values for some monosubstituted
derivatives of 6 have been reported. Methyl[15−18] and phenyl[19] substituents were found
to have positive A values, albeit much lower in magnitude
than for the corresponding cyclohexane analogues.[20−22] Other substituents
such as CF3[23,24] and SiH3[25] were found to prefer the axial position, contrary
to their cyclohexane analogues.
Scheme 1
Theoretical studies have confirmed
the increased preference for
the axial position when monosubstitutedsilacyclohexanes are compared
with monosubstituted cyclohexanes.[26,27] A unified
model that can explain the conformational properties of both ring
systems has not yet been presented. Therefore, more information would
be valuable. The A values of the halocyclohexanes 2–5 have been reported a number of times
using different methods (for a summary of the data, see refs (9) and (20)). The experimental and
theoretical A values for 2 vary from
0.1 to 0.4 kcal mol–1 depending on the method, but
most of the experimental values lie between 0.2 and 0.3 kcal mol–1. Most of the values for 3, 4, and 5 are close to 0.5 kcal mol–1. The fluoro compound 7 has been studied extensively
by our group, applying not only experimental methods such as gas electron
diffraction (GED), dynamic nuclear magnetic resonance (DNMR), microwave
spectroscopy (MW), and temperature-dependent Raman spectroscopy but
also quantum-chemical (QC) calculations.[28,29] A separate infrared and Raman study has recently appeared.[30] An axial preference for the F substituent (A values from −0.1 to −0.5 kcal mol–1) was manifested by all of the experimental methods and calculations.
We then embarked upon a comprehensive study of the conformational
properties of the chloro-, bromo-, and iodo-substituted silacyclohexanes
(8–10, respectively). In this paper,
we present results from GED, DNMR, and Raman experiments as well as
QC calculations. The GED experiment for compound 10(31) has been reported separately, and short notices
of the GED results for 8(32) and 9(33) have been given.
Recently, a separate study by Klaeboe and co-workers on the vibrational
spectra (infrared and Raman) of 1-chlorosilacyclohexane (8) has been published.[34]
Results and Discussion
GED Analysis
Structure refinements of compounds 8 and 9 were carried out with least-squares analyses
of the experimental molecular intensity curve sM(s). According to QC calculations, two stable conformers
of C5H10SiHX exist: axial (ax) and equatorial
(eq). Each form possesses C symmetry with a chair conformation of the six-membered ring.
The radial distribution functions for 8 and 9 are shown in Figures 1 and 2, respectively. Important structural parameters along with
the equilibrium compositions in the gas phase are given in Table 1 for 8, 9, and 10. In all cases there is a clear preference for the axial form. A
structural model of the axial form along with atomic numbering is
shown in Figure 3.
Figure 1
(top) Experimental (open
circles) and calculated (solid lines)
radial distribution curves of the C5H10SiHCl
molecule. (bottom) Difference curve for the optimized mixture of the
conformers.
Figure 2
(top) Experimental (open
circles) and calculated (solid lines)
radial distribution curves of C5H10SiH–Br
molecule. (bottom) Difference curve for the optimized mixture of the
conformers.
Table 1
Structural Parameters
of 1-Halo-1-silacyclohexane
Molecules by Gas-Phase Electron Diffractiona
X = Cl (8)
X = Br (9)
X = I (10)
–ΔG298° (kcal mol–1)b
–0.43(18)
–0.82(21)
–0.59(22)
χax (%)b
67(5)
80(5)
73(7)
Bond Lengths (Å)
Si–C
1.859(2)
1.860(2)
1.868(5)
Si–Xax
2.073(2)
2.232(2)
2.458(6)
Si–Xeq
2.063(2)
2.221(2)
2.447(6)
C2–C3
1.534(3)
1.528(3)
1.535(9)
C3–C4
1.529(3)
1.523(3)
1.528(9)
(C–H)av
1.116(4)
1.103(3)
1.090(8)
Bond Angles (deg)c
C2–Si–C6
107.7(6)
106.2(4)
105.5(10)
C3–C4–C5
116.8(15)
116.7(7)
112.2(26)
(H–C–H)av
106.4d
106.8d
106.8d
C2–C3–C4
114.2(7)
115.5(9)
114.1(13)
Si–C2–C3
110.3(4)
111.0(3)
110.2(7)
X–Si–C2
110.3(5)
109.7(3)
109.3(10)
C2–Si–C6–C5
–42.2(15)
–42.6(8)
–42.6(27)
Si–C6–C5–C4
51.6(12)
51.3(7)
55.8(18)
C6–C5–C4–C3
–62.7(14)
–59.6(16)
–67.4(26)
Atom numbering is shown in Figure 3. The R factors are 5.9, 5.4 and
9.5% for 8, 9, and 10, respectively.
Values in parentheses are 3σ.
Relative standard free energy (−ΔG°) and mole fraction (χ).
Hax–C2–C3
= Heq–C3–C2 = Heq–C3–C4
= Hax–C3–C2.
Fixed.
Figure 3
Molecular model and atom
numbering.
(top) Experimental (open
circles) and calculated (solid lines)
radial distribution curves of the C5H10SiHCl
molecule. (bottom) Difference curve for the optimized mixture of the
conformers.(top) Experimental (open
circles) and calculated (solid lines)
radial distribution curves of C5H10SiH–Br
molecule. (bottom) Difference curve for the optimized mixture of the
conformers.Molecular model and atom
numbering.Atom numbering is shown in Figure 3. The R factors are 5.9, 5.4 and
9.5% for 8, 9, and 10, respectively.
Values in parentheses are 3σ.Relative standard free energy (−ΔG°) and mole fraction (χ).Hax–C2–C3
= Heq–C3–C2 = Heq–C3–C4
= Hax–C3–C2.Fixed.As can
be seen from Table 1 and ref (28), the Si–C bond
is enlarged in the series C5H10SiHX with X =
F, Cl, Br, and I, starting from 1.854(2) Å for X = F through
1.859(2), 1.860(2) to 1.868(5) Å, respectively. This may be rationalized
with the use of Bent’s rule,[35] according
to which a central atom tends to direct hybrids of higher p character
toward the more electronegative substituents. This leads to higher
s character of the hybrids directed toward the less electronegative
substituents attached to the same central atom. Because the size of
hybrids of higher p character is larger than those of higher s character,
the bonds adjacent to the more electronegative substituent have to
become shorter. Hence, the Si–C bond has to become shorter
as the electronegativity of the halogen atom increases in going from
I to F.
NMR Spectroscopy
Above about 140 K, the 13C NMR spectra show rapid inversion of all of the compounds 8–10. Upon cooling below 140 K, the spectra
show significant line broadening and gradual splitting of the signals
into two components, indicating a mixture of two conformers. This
effect is shown in Figure 4 for carbons C3
and C5 in compound 8. The low-temperature spectra of 9 and 10 follow the same pattern. The higher-field
(lower δ) component signal is much larger in all cases. In previous
work on related compounds, we have shown that the 13C chemical
shifts of the ring carbonatoms C3 and C5 have lower δ values
when the substituent is in the axial position compared with that in
the equatorial one.[15,25] The same results have been derived
by computational studies for 8, 9 and 10. On the basis of the 13C NMR signal weights
(hence relative populations) and QC chemical shift calculations, we
conclude that the same holds for the C2(6) and C3(5) ring carbon atoms.
No clear splitting of the C4 signals is observed, whereas the QC chemical
shift calculations predict the ring C4 atoms to have slightly higher
δ values when the substituent is in the axial position compared
with the equatorial one. For more information, see the Experimental Section and the Supporting
Information.
Figure 4
Simulation of the 13C NMR signals for C3 and
C5 of compound 8 in a mixture of CD2Cl2, CHFCl2, and CHF2Cl in a ratio of 1:1:3
at low temperatures.
Experimental spectra are on the left, and calculated spectra are on
the right.
Simulation of the 13C NMR signals for C3 and
C5 of compound 8 in a mixture of CD2Cl2, CHFCl2, and CHF2Cl in a ratio of 1:1:3
at low temperatures.
Experimental spectra are on the left, and calculated spectra are on
the right.Dynamic NMR simulations of the
spectra obtained using the software
WinDNMR,[36] as shown in Figure 4, allowed the determination of the rate constants
(ke→a) and the corresponding free
energies of activation (ΔGe→a⧧) as functions
of temperature. The most reliable results were obtained from the C3(5)
pair of carbon atoms. Chemical shifts derived from the NMR spectra
recorded at the lowest temperatures were assumed to represent conditions
of negligible ring inversion. Average values for ΔGe→a⧧ are listed in Table 2. The equilibrium constants
(Ke→a), and hence the free energy
changes (ΔGe→a), for the
equatorial to axial transformations at temperatures close to the coalescence
points were determined from the relative signal intensities (Table 2).
Table 2
Parameters Relevant
to Conformational
Equilibria and Rates of Exchange Derived from Dynamic NMR Simulations
of 13C NMR spectra (C3 and C5 Atoms)
parameter
8
9
10
coalescence point (K)
127(5)
132(5)
132(5)
ΔGe→a⧧ (kcal mol–1)a
5.3(1)
5.4(2)
5.4(2)
Ke→ab
4.88(4)
5.99(4)
5.99(4)
ΔGe→a (kcal mol–1)c
–0.35(3)
–0.40(3)
–0.40(3)
Average values over the temperature
ranges 107–150 K (8), 110–150 K (9), and 113–132 K (10).
Ke→a is the equilibrium constant for the equatorial to axial inversion
derived from ax:eq signal intensity ratios over the temperature ranges
specified in footnote a.
ΔGe→a = −RT ln(Ke→a) at T = 128.5 K.
Average values over the temperature
ranges 107–150 K (8), 110–150 K (9), and 113–132 K (10).Ke→a is the equilibrium constant for the equatorial to axial inversion
derived from ax:eq signal intensity ratios over the temperature ranges
specified in footnote a.ΔGe→a = −RT ln(Ke→a) at T = 128.5 K.
Raman
Spectroscopy
In previous publications, we used
temperature-dependent Raman spectroscopy to analyze the ratio of axial
and equatorial conformers in Si-substituted silacyclohexanes.[17,25,28,37] The application of the method to this problem has been described
in detail in one of the publications,[25] and therefore, only a brief description will be given here. Temperature-dependent
Raman spectra of compounds are typically analyzed using the van’t
Hoff relation, ln(A1/A2) = −ΔH/RT + constant, where A1 and A2 are the intensities of the vibrational bands belonging
to two different conformers of the molecule. Either the heights or
areas of the bands can be used for the A1/A2 ratio. The relation is correct under
the assumption that ΔH and the Raman scattering
coefficients are temperature-independent.In our previous reports
on related silacyclohexanes, we used pairs of Raman bands belonging
to the axial and equatorial conformers. As a rule, the symmetric Si–C2(6)
stretching mode and/or the Si–X stretching mode (X = substituent)
have been found to be well or moderately well separated in the sample
spectrum, and the intensity ratio has shown variation with temperature.
Assignment to the axial or equatorial conformer is made by comparison
with calculated vibrations.In this contribution, we used the
Si–X (X = Cl, Br, I) stretching
vibrations for the axial and equatorial conformers for all of the
compounds 8–10. The experimental
and calculated frequencies are summarized in Table 3.
Table 3
Experimental (Room Temperature) and
Calculated Si–X Stretching Frequencies for Compounds 8, 9, and 10 (cm–1)
experimental
calculateda
axial
equatorial
axial
equatorial
8
474
538
472
537
9
389
432
391
436
10
324
402
313
394
B3LYP[38,39]/6-31+G(d,p)[40−45] for 8 and 9, B3LYP/aug-cc-pVDZ[46,47] for 10.
B3LYP[38,39]/6-31+G(d,p)[40−45] for 8 and 9, B3LYP/aug-cc-pVDZ[46,47] for 10.Low-temperature
spectra were recorded for pure 8 and 9 at
temperatures varying from 300 to 195 K at 15 K intervals.
Spectra were also recorded for the two compounds in THF and heptane
solution. Low-temperature spectra were recorded for pure 10 and for 10 in toluene solution at temperatures varying
from 290 to 190 K at 10 K intervals.Signal overlap makes the
Raman spectra of 8 and 10 somewhat more
complicated in the Si–X stretching
region than the spectrum of 9. Shown in the bottom panel
of Figure 5 is the room-temperature Raman spectrum
of neat 10 over the wavenumber range 200–800 cm–1; the middle panel shows the expanded spectrum over
the range 300–420 cm–1, and calculated spectra
over the 280–420 cm–1 range are shown in
the upper panel. More information on band deconvolution and the temperature
dependence of the spectra of the three compounds is given in the Supporting Information. Figure 6 shows the van’t Hoff plots for the 324/402 cm–1 band pair of pure 10 using both peak
heights (top panel) and peak areas (bottom panel).
Figure 5
Raman spectrum of C5H10SiHI over the range
200–800 cm–1 (bottom), expanded spectrum
over the range 300–420 cm–1 (middle), and
calculated spectra over the range 280–420 cm–1 (top).
Figure 6
Van’t Hoff plots for the 324/402 cm–1 band
pair of neat C5H10SiHI using (bottom) band areas
and (top) band heights.
Raman spectrum of C5H10SiHI over the range
200–800 cm–1 (bottom), expanded spectrum
over the range 300–420 cm–1 (middle), and
calculated spectra over the range 280–420 cm–1 (top).Van’t Hoff plots for the 324/402 cm–1 band
pair of neat C5H10SiHI using (bottom) band areas
and (top) band heights.The resulting ΔH values are listed
for compounds 8–10 in Tables 4, 5, and 6, respectively.
The listed entries are averaged values from measured peak heights
and peak areas. We estimate that ±0.15 kcal mol–1 is a fair limit for the error involved in the ΔH results. We note that the polarity of the solvent does not significantly
influence ΔH. We also note that our results
for 8 are in good agreement with the average value reported
by Klaeboe and co-workers (−0.67 kcal mol–1) using other band pairs.[34]
Table 4
Conformational Properties of C5H10SiHCl (8)
method
T = 0 K ΔE = Eax – Eeq (kcal mol–1)
T = 300–195 K ΔH = Hax – Heq (kcal mol–1)
T = 128.5 K A = Gax – Geq (kcal mol–1)
T = 352 K A = Gax – Geq (kcal mol–1)
Calculations
CCSD(T)/CBS + thermal corr.
–0.54
–0.54
–0.50
–0.43
Experiments
GED
–0.43(18)
Raman neat
–0.58(15)
Raman in heptane
–0.40(15)
Raman in THF
–0.60(15)
DNMR
–0.35(6)
Table 5
Conformational Properties of C5H10SiHBr (9)
method
T = 0 K ΔE = Eax – Eeq (kcal mol–1)
T = 300–195 K ΔH = Hax – Heq (kcal mol–1)
T = 128.5 K A = Gax – Geq (kcal mol–1)
T = 352 K A = Gax – Geq (kcal mol–1)
Calculations
CCSD(T)/CBS + thermal corr.
–0.62
–0.62
–0.58
–0.49
Experiments
GED
–0.82(21)
Raman neat
–0.46(15)
Raman in heptane
–0.40(15)
Raman in THF
–0.60(15)
DNMR
–0.40(3)
Table 6
Conformational properties of C5H10SiHI (10)
method
T = 0 K ΔE = Eax – Eeq (kcal mol–1)
T = 290–190 K ΔH = Hax – Heq (kcal mol–1)
T = 128.5 K A = Gax – Geq (kcal mol–1)
T = 352 K A = Gax – Geq (kcal mol–1)
Calculations
CCSD(T)/CBS + thermal corr.
–0.63
–0.64
–0.59
–0.48
Experiments
GED
–0.59(22)
Raman neat
–0.67(15)
Raman in toluene
–0.72(15)
DNMR
–0.40(3)
Computational Studies
The minimum-energy pathways for the
chair-to-chair inversion of
compounds 8, 9, and 10 (and 7 for comparison) are shown in Figure 7 and are overall very similar. Similarly to previous silacyclohexanes,
the inversion path starting from the axial conformer consists of a
half-chair/sofa-like transition state from which the molecule can
move into a twist form of relatively high energy. The molecule then
goes through a boat form into a more stable twist form at the midpoint
of the path. The molecule then proceeds further through a boat transition
state, a twist minimum, and a half-chair/sofa transition state before
it ends up in the equatorial form.
Figure 7
Minimum-energy path for chair-to-chair
inversion of compounds 7–10.
Minimum-energy path for chair-to-chair
inversion of compounds 7–10.High-level ab initio calculations
were carried out in order to
get accurate potential energy differences between the axial and equatorial
conformers of all three compounds. Shown in Tables 4–6 are calculated relative energies
with thermodynamic corrections at experimental temperatures compared
to the experimental (GED, Raman, NMR) energy differences. The 0 K
potential energy differences (ZPE-exclusive) evaluated at the CCSD(T)/CBS
level of theory for the three compounds as well as the fluoro compound
(ΔE = −0.15 kcal/mol) show a trend of
increasing stability of the axial conformer in going from the lightest
halogen derivative to the heaviest. This trend can also be seen in
the values obtained from the various experiments. Overall the agreement
with experiment is satisfactory, and we suspect the differences to
be mainly due to experimental uncertainties, the imperfect estimations
of entropic contributions in the calculations, and solvent effects.
The agreement between theory and the Raman experiments is very satisfactory,
which may be partly due to the fact that only enthalpic energy differences
are being compared (i.e., no entropy effects). There is worse agreement
between the theoretical and GED free energy differences for the bromine
compound, where a larger population of the axial conformer is found
in the GED experiment; however, this is not seen in the low-temperature
NMR experiment.A systematic 0.15–0.19 kcal/mol difference
in the low-temperature
free energy values from theory and the NMR experiments is evident,
although the trend in the values is the same.We note that we
did not attempt to take into account solvent effects
in the computations, as such effects are very hard take into account
accurately.A closer look at Tables 4–6 reveals that when the experimental
uncertainties
are taken into account, all of the experimental and theoretical results
for the conformational energy (axial – equatorial) for compounds 8, 9, and 10 fit into a remarkably
narrow range of −0.50 ± 0.15 kcal mol–1.In order to better understand the reasons for the conformational
preference of 1-halo-1-silacyclohexane molecules we carried out a
natural bond order (NBO) analysis.[48−51] With the use of NBO analysis,
we performed a decomposition of the total electronic energy into a
Lewis component, E(L), and a non-Lewis
component, E(NL) (see Table 7). The Lewis component corresponds to the localized structure
that has populations of each occupied orbital equal to two electrons.
Thus, the Lewis energy nearly exactly incorporates steric and electrostatic
interactions and the non-Lewis component corresponds to all types
of conjugations.[50,51] It can be seen from the data
in Table 7 that on the basis of the non-Lewis
components, the effects of conjugations predict the equatorial conformer
to be more preferable. Next, NBO analysis was used to calculate the
total steric energy.[52−54] It follows from the data shown in Table 7 that the steric energy is considerably higher in
the axial conformer than in the equatorial conformer for all compounds.
Thus, the axial conformers of 1-X-1-silacyclohexane molecules (X =
Cl, Br, I) are examples of stabilization of the form that is unfavorable
from the point of view of steric energy and conjugation effects and
is determined mainly by electrostatic interactions.
Table 7
Results of the NBO Analysis of 1-Halo-1-silacyclohexane
Molecules and Energy Decomposition of the Total Electronic Energy E(total) into Lewis E(L), Non-Lewis E(NL), Total Steric E(ST), and Electrostatic E(L–ST) Energies (See the Text)a
Cl
Br
I
ax
eq
ax
eq
ax
eq
ΔE(total)
0.0
0.89
0.0
0.83
0.0
0.95
ΔE(L)
0.0
2.73
0.0
2.53
0.0
2.86
ΔE(NL)
1.84
0.0
1.70
0.0
1.91
0.0
ΔE(ST)
3.76
0.0
11.2
0.0
5.41
0.0
ΔE(L–ST)
0.0
6.49
0.0
13.8
0.0
8.27
Relative energies are in kcal mol–1. Calculations
were performed at the theoretical levels
M06-2X[55]/6-311++G**[40−45] for C5H10SiHCl and M06-2X/SDB[56]-aug-cc-pVTZ for C5H10SiHBr and C5H10SiHI.
Relative energies are in kcal mol–1. Calculations
were performed at the theoretical levels
M06-2X[55]/6-311++G**[40−45] for C5H10SiHCl and M06-2X/SDB[56]-aug-cc-pVTZ for C5H10SiHBr and C5H10SiHI.
Conclusions
With this contribution, all 1-halogen-substituted 1-silacyclohexanes
have been studied by various experimental techniques and high-level
calculations. GED, DNMR, and temperature-dependent Raman experiments
all agree that for all of these derivatives the axial conformer is
preferred over the equatorial one. This contradicts findings for the
corresponding cyclohexane derivatives. For a better comparison of
the compounds, we have collected the calculated ΔE values at the CCSD(T)/CBS level for both series into one graph (Figure 8). Although the synthesis and conformational experimental
analysis on astatine derivatives are not conceivable,[57] we added At derivatives to the calculations to explore
further the periodic trend down the halogen group. We may conclude
four trends from Figure 8. First, for both
series the fluoro derivatives have rather similar energies for the
axial and equatorial conformers. Second, for Cl, Br, and I, the cyclohexane
derivatives have a distinct preference for the equatorial conformer,
whereas the silacyclohexanes have a somewhat stronger preference for
the axial conformer. Third, the first two trends are in alignment
with the experimental results. Fourth, the calculations predict At
to behave in a similar way as Cl, Br, and I.
Figure 8
Conformational energies
ΔE = Eax – Eeq for C6H11X and C5H10SiHX.
Conformational energies
ΔE = Eax – Eeq for C6H11X and C5H10SiHX.
Experimental Section
Materials
The
1-chloro-1-silacyclohexane used as the
starting material for the synthesis listed below was prepared in slight
variation to the general preparation of silacyclohexanes described
by West.[58] It should be pointed out that
a mixture of chlorinated and brominated substances is usually obtained
by that method because of halogen exchange between the di-Grignard
reagent BrMg(CH2)5MgBr (or the MgBrCl reaction
salt) and SiHCl3 during the reaction. 1-Chloro-1-silacyclohexane
and 1-bromo-1-silacyclohexane may be obtained in higher purity by
reacting 1-phenyl-1-silacyclohexane with HCl and HBr, respectively.
The di-Grignard reagent was prepared in a traditional way. All solvents
were dried using appropriate drying agents and distilled prior to
use. Standard Schlenk techniques and an inert atmosphere of dry nitrogen
were used for all manipulations.
1-Phenyl-1-silacyclohexane
PhMgBr (14.9 g, 82.0 mmol)
was slowly added to 1-chloro-1-silacyclohexane (10.0 g, 74.0 mmol)
dissolved in Et2O (90 mL) while stirring at 0 °C.
The diethyl ether was distilled off the reaction mixture and replaced
by pentane. The reaction mixture was then filtered under nitrogen
and reduced pressure, and the salt was discarded. Distillation of
the reaction mixture under reduced pressure (112–115 °C,
25 Torr) yielded 12.4 g (70.0 mmol, 95%) of pure 1-phenyl-1-silacyclohexane.
1-Chloro-1-silacyclohexane (8)
Anhydrous
HCl (2.4 g, 66.0 mmol) was condensed into a 100 mL ampule containing
1-phenyl-1-silacyclohexane (10.5 g, 60.0 mmol), and the ampule was
then sealed off in vacuum. The ampule was inserted in a −78
°C cooling bath (methanol/dry ice bath). Dry ice was added to
the cooling bath on a regular basis for the next 2 days. The content
of the ampule was then allowed to stand in the cooling bath and slowly
warm to room temperature. After the ampule was opened, all of the
volatile components were condensed on a N2(l)-cooled finger.
The desired product was collected (after the benzene byproduct had
been removed) by distillation under nitrogen at 120–122 °C
(4.68 g, 58%) as a colorless liquid. The product was characterized
by NMR and MS. 1H NMR (400 MHz, CDCl3): δ
0.94–1.06 (m, 2H, CH2), 1.32–1.42 (m, 1H,
CH2(ax/eq)), 1.52–1.60 (m, 1H, CH2(ax/eq)), 1.72–1.85 (m, 4H, CH2), 4.85–4.87 (m,
1H, SiH). 13C{1H} NMR (101 MHz, CDCl3): δ 14.8, 23.1, 29.0. 29Si NMR (79 MHz, CDCl3): δ 7.9. MS (EI, 70 eV) m/z (%): 134 (90), 106 (100), 63 (76). HRMS m/z: calcd for C5H11SiCl(35)
134.0319, found 134.0312.
1-Bromo-1-silacyclohexane (9)
Anhydrous
HBr (5.3 g, 66.0 mmol) was condensed into a 100 mL ampule containing
1-phenyl-1-silacyclohexane (10.5 g, 60.0 mmol), and the ampule was
then sealed off in vacuum. The ampule was inserted in a −78
°C cooling bath (methanol/dry ice bath). Dry ice was added to
the cooling bath on a regular basis for the next 2 days. The content
of the ampule was then allowed to stand in the cooling bath and slowly
warm to room temperature. After the ampule was opened, all of the
volatile components were condensed on a N2(l)-cooled finger.
The desired product was collected (after the benzene byproduct had
been removed) by distillation under nitrogen at 138–140 °C
(7.78 g, 72%) as a colorless liquid. The product was characterized
by NMR and MS. 1H NMR (400 MHz, CDCl3): δ
1.06–1.18 (m, 4H, CH2), 1.33–1.43 (m, 1H,
CH2(ax/eq)), 1.54–1.62 (m, 1H, CH2(ax/eq)), 1.72–1.87 (m, 4H, CH2), 4.84–4.86 (m,
1H, SiH). 13C{1H} NMR (101 MHz, CDCl3): δ 14.7, 23.3, 29.0. 29Si NMR (79 MHz, CDCl3): δ −21.9. MS (EI, 70 eV) m/z (%): 178 (79), 150 (100), 109 (54). HRMS m/z: calcd for C5H11SiBr(79) 177.9813, found 177.9845.
1-Iodo-1-silacyclohexane
(10)
Iodotrimethylsilane
(13.9 g, 69.4 mmol) was slowly added to a solution of 1-chloro-1-silacyclohexane
(8.5 g, 63.1 mol) in CH2Cl2 (220 mL) under vigorous
stirring. After complete addition, the reaction mixture was stirred
for 3 days. The desired product was collected (after CH2Cl2 had been removed) by distillation under nitrogen at
108–110 °C and 50 Torr (8.10 g, 35.8 mmol, 57%) as a colorless
liquid. 1H NMR (400 MHz, CDCl3): δ 1.16–1.24
(m, 2H, CH2(ax/eq)), 1.26–1.36 (m, 2H, CH2(ax/eq)), 1.37–1.45 (m, 1H, CH2(ax/eq)), 1.54–1.64
(m, 1H, CH2(ax/eq)), 1.68–1.78 (m, 2H, CH2), 1.79–1.88 (m, 2H, CH2), 4.80 (s, 1JH–Si = 224.3 Hz, 1H, SiH). 13C{1H} NMR (101 MHz, CDCl3): δ
14.2, 23.7, 28.9. 29Si{1H} NMR (79 MHz, CDCl3): δ −16.0.
GED Experiments
The electron diffraction patterns of 8 and 9 were recorded at M. V. Lomonosov Moscow
State University on the EMR-100 M electron diffraction apparatus.
Nozzle temperatures were 46 and 54 °C for 8 and
51 and 54 °C for 9 for the long and short nozzle-to-plate
distances, respectively, and an accelerating voltage of about 60 kV
and a cubic sector were used. For the scanning on an Epson Perfection
4870 photoscanner, three plates were selected for the long nozzle-to-plate
distance (362 mm) and three plates for the short (194 mm) nozzle-to-plate
distance. The wavelengths of the electron beam were determined with
the use of the scattering pattern from gaseous CCl4 and
were equal to 0.049591 and 0.049402 Å for 8 and
0.049593 and 0.049459 Å for 9 for the long and short
nozzle-to-plate distances, respectively. Atomic scattering factors
were taken from the International Tables of Crystallography.[59] Experimental backgrounds were drawn as cubic
spline functions to the difference between the experimental and theoretical
molecular intensity curves with the use of a program developed by
A.V.B. Observed intensity curves were recorded in the ranges s = 3.2–19.0 and 7.6–38.0 Å–1 for 8 and s = 3.2–19.0 and
7.2–35.0 Å–1 for 9 for
the long and short nozzle-to-plate distances, respectively. Both curves
were digitized with increments of Δs = 0.2
Å–1 [s = (4π/λ)
sin θ/2, where λ is the electron wavelength and θ
is the scattering angle]. Least-squares structure refinements were
carried out with the use of the computer program KCED25M, which was
developed by Norwegian researchers[60,61] and modified
by A.V.B. Weight matrices were diagonal. The short-distance data were
assigned 0.5 weight and the long-distance data 1.0 weight. Estimated
standard deviations calculated by the program were multiplied by a
factor of 3 to include added uncertainty due to data correlation and
an estimated scale uncertainty of 0.1%.[62] The observed and calculated molecular intensity curves are compared
in Figures 9 and 10.
The GED experiment for 1-iodo-1-silacyclohexane has been published
elsewhere.[31]
Figure 9
(top) Experimental (open
circles) and calculated (solid line) molecular
intensity curves for C5H10SiHCl. (bottom) Difference
curve for the optimized mixture of the conformers.
Figure 10
(top) Experimental (open circles) and calculated (solid
line) molecular
intensity curves for C5H10SiHBr. (bottom) Difference
curve for the optimized mixture of the conformers.
(top) Experimental (open
circles) and calculated (solid line) molecular
intensity curves for C5H10SiHCl. (bottom) Difference
curve for the optimized mixture of the conformers.(top) Experimental (open circles) and calculated (solid
line) molecular
intensity curves for C5H10SiHBr. (bottom) Difference
curve for the optimized mixture of the conformers.
Low-Temperature NMR Experiments
A 400 MHz NMR spectrometer
(Bruker Avance 400) was used for all of the NMR experiments. A solvent
mixture of CD2Cl2, CHFCl2, and CHF2Cl in a ratio of 1:1:3 was used for low-temperature 13C NMR measurements on 8 and 9. Compound 10 could not be measured in the same freon mixture because
of limited solubility at low temperatures. A different solvent mixture
of CD2Cl2, CHF2Cl, and CF3Br in a ratio of 1:2:2 allowed us to perform measurements on 10 successfully. The temperature of the probe was calibrated
by means of a type K (chromel/alumel) thermocouple inserted into a
dummy tube. The readings are estimated to be accurate within ±2
K. The NMR spectra were loaded into the data-handling program IGOR
(WaveMetrics) for analysis, manipulations, and graphic display. Line
shape simulations of the NMR spectra were performed using the WinDNMR
program.[36]
Low-Temperature Raman Experiments
Raman spectra were
recorded with a Jobin Yvon T64000 spectrometer equipped with a triple
monochromator and a CCD camera. The samples were filled into 1 mm
capillary glass tubes and irradiated by the green 532 nm line of a
frequency-doubled Nd:YAG laser (Coherent, DPSS model 532-20, 10 mW).
Spectra were recorded from pure compound and in heptane and THF solutions.
A continuous-flow cryostat (Oxford Instruments OptistatCF) using liquid
nitrogen for cooling was employed for the low-temperature measurements.
Computational Details
All of
the calculations for direct comparison and use with GED
experiments were carried out at the MP2(full)/SDB-aug-cc-pVTZ level
of theory for Br and I atoms and the MP2(full)/aug-cc-PVTZ level of
theory for all other atoms. The theoretical molecular force fields
were used to calculate mean vibrational amplitudes and vibrational
correction terms necessary for GED analysis. To reduce the number
of refined parameters, the following assumptions were made on the
basis of MP2 results. Only the geometric parameters of the axial conformer
were refined, and the parameters of the equatorial form were tied
to those of the axial conformer using the calculated differences.
For the axial conformer, the difference between the nearly equal C2–C3
and C3–C4 bond lengths was constrained to the calculated value.
All of the C–H bonds, the H–C–H angles, and the
Hax–C2–C3, Heq–C3–C2,
Heq–C3–C4, and Hax–C3–C2
angles were set equal. Angles that define the orientation of the C–H
bonds were set to calculated values. The optimized theoretical geometry
parameters were found to be in good agreement with experimental ones.The minimum-energy pathways for the chair-to-chair inversions of
compounds 7–10 were calculated in
redundant internal coordinates with the STQN(Path)[63] method as implemented in Gaussian 09[64] at the B3LYP/6-31G(d)[40−45] level of theory (def2-SVP basis set and ECP used for iodine[65]).High-level ab initio calculations were
carried out on MP2/cc-pVTZ[46,47] optimized geometries
(using the cc-pVTZ-PP and ECP on I and At[66]). The energy differences at the CCSD(T)/CBS
(CBS = complete basis set) level were then estimated by performing
large-basis MP2 calculations that were extrapolated to the basis set
limit and then applying a CCSD(T) correction to the MP2/CBS value:The MP2 calculations were performed with correlation-consistent
basis sets up to the aug-cc-pV5Z level (using the aug-cc-pVXZ-PP basis
set and ECP for iodine and astatine). The energy difference obtained
at the MP2/aug-cc-pV5Z level was estimated as being sufficiently close
to the basis set limit, MP2/CBS. The (ΔECCSD(T)/small basis – ΔEMP2/small basis) term was calculated at the CCSD(T)/aug-cc-pVTZ
and MP2/aug-cc-pVTZ levels. All of the MP2 and CCSD(T) calculations
performed with Molpro 2006.1.[67] Thermal
corrections to enthalpies and free energies were calculated from B97-1[68]/def2-TZVPP[65] harmonic
vibrational frequencies (accompanying def2 ECP on iodine). This CCSD(T)/CBS
protocol has been used in previous studies on silacyclohexanes.[17]All of the enthalpy and entropy corrections
to the conformational
energies were calculated at the same level (B97-1/def2-TZVPP) for
consistency. The B97-1 functional is known to predict good harmonic
frequencies and enthalpy and entropy corrections.[69] A problem with harmonic frequency calculations for six-membered
rings persists, however. Six-membered rings include a number of low-frequency
vibrations that are known to be badly predicted by the harmonic approximation.
As they contribute significantly to the entropy, errors in the entropy
correction and hence the computed free energy differences can be expected.
The absolute 13C NMR shielding constants of the carbon
nuclei were calculated with the GIAO method[70,71] using the PBE1 functional[72−74] and a mixed basis set consisting
of aug-pcS-2[75] on carbon atoms and def2-TZVPP
on all other atoms (including the def2 ECP on iodine). Shielding constants
were converted to chemical shifts by reference to 13C shielding
constants in TMS. All of the geometries (including the TMS standard)
were optimized at the MP2/cc-pVTZ level. The magnitudes of the relative
shieldings are in reasonable agreement with experiment (slight overestimation),
and their signs confirmed the expected assignment in which the ring
carbon nuclei (apart from C4) are more shielded in the axial conformer
than in the equatorial one. All of the calculated 13C NMR
shielding constants are available in the Supporting
Information.
Authors: Kenneth B. Wiberg; Jack D. Hammer; Henry Castejon; William F. Bailey; Eric L. DeLeon; Ronald M. Jarret Journal: J Org Chem Date: 1999-03-19 Impact factor: 4.354
Authors: Sunna O Wallevik; Ragnar Bjornsson; Agúst Kvaran; Sigridur Jonsdottir; Ingvar Arnason; Alexander V Belyakov; Alexander A Baskakov; Karl Hassler; Heinz Oberhammer Journal: J Phys Chem A Date: 2010-02-11 Impact factor: 2.781