Literature DB >> 24352952

Repeated functional convergent effects of NaV1.7 on acid insensitivity in hibernating mammals.

Zhen Liu1, Wei Wang, Tong-Zuo Zhang, Gong-Hua Li, Kai He, Jing-Fei Huang, Xue-Long Jiang, Robert W Murphy, Peng Shi.   

Abstract

Hibernating mammals need to be insensitive to acid in order to cope with conditions of high CO2; however, the molecular basis of acid tolerance remains largely unknown. The African naked mole-rat (Heterocephalus glaber) and hibernating mammals share similar environments and physiological features. In the naked mole-rat, acid insensitivity has been shown to be conferred by the functional motif of the sodium ion channel NaV1.7. There is now an opportunity to evaluate acid insensitivity in other taxa. In this study, we tested for functional convergence of NaV1.7 in 71 species of mammals, including 22 species that hibernate. Our analyses revealed a functional convergence of amino acid sequences, which occurred at least six times independently in mammals that hibernate. Evolutionary analyses determined that the convergence results from both parallel and divergent evolution of residues in the functional motif. Our findings not only identify the functional molecules responsible for acid insensitivity in hibernating mammals, but also open new avenues to elucidate the molecular underpinnings of acid insensitivity in mammals.

Entities:  

Keywords:  SCN9A; acid insensitivity; adaptation; convergent evolution

Mesh:

Substances:

Year:  2013        PMID: 24352952      PMCID: PMC3871328          DOI: 10.1098/rspb.2013.2950

Source DB:  PubMed          Journal:  Proc Biol Sci        ISSN: 0962-8452            Impact factor:   5.349


  23 in total

1.  PROPKA3: Consistent Treatment of Internal and Surface Residues in Empirical pKa Predictions.

Authors:  Mats H M Olsson; Chresten R Søndergaard; Michal Rostkowski; Jan H Jensen
Journal:  J Chem Theory Comput       Date:  2011-01-06       Impact factor: 6.006

2.  Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites.

Authors:  Wendy S W Wong; Ziheng Yang; Nick Goldman; Rasmus Nielsen
Journal:  Genetics       Date:  2004-10       Impact factor: 4.562

3.  Sodium channel genes and the evolution of diversity in communication signals of electric fishes: convergent molecular evolution.

Authors:  Harold H Zakon; Ying Lu; Derrick J Zwickl; David M Hillis
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-27       Impact factor: 11.205

4.  PAML 4: phylogenetic analysis by maximum likelihood.

Authors:  Ziheng Yang
Journal:  Mol Biol Evol       Date:  2007-05-04       Impact factor: 16.240

5.  pH-temperature interactions on protein function and hibernation: GDP binding to brown adipose tissue mitochondria.

Authors:  A Malan; E Mioskowski
Journal:  J Comp Physiol B       Date:  1988       Impact factor: 2.200

6.  Composition and evolution of the V2r vomeronasal receptor gene repertoire in mice and rats.

Authors:  Hui Yang; Peng Shi; Ya-Ping Zhang; Jianzhi Zhang
Journal:  Genomics       Date:  2005-09       Impact factor: 5.736

7.  The molecular basis of acid insensitivity in the African naked mole-rat.

Authors:  Ewan St John Smith; Damir Omerbašić; Stefan G Lechner; Gireesh Anirudhan; Liudmila Lapatsina; Gary R Lewin
Journal:  Science       Date:  2011-12-16       Impact factor: 47.728

8.  Pervasive adaptive evolution in mammalian fertilization proteins.

Authors:  Willie J Swanson; Rasmus Nielsen; Qiaofeng Yang
Journal:  Mol Biol Evol       Date:  2003-01       Impact factor: 16.240

9.  Graphical analysis of pH-dependent properties of proteins predicted using PROPKA.

Authors:  Michał Rostkowski; Mats H M Olsson; Chresten R Søndergaard; Jan H Jensen
Journal:  BMC Struct Biol       Date:  2011-01-26

10.  Parallel evolution of KCNQ4 in echolocating bats.

Authors:  Zhen Liu; Shude Li; Wei Wang; Dongming Xu; Robert W Murphy; Peng Shi
Journal:  PLoS One       Date:  2011-10-24       Impact factor: 3.240

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  11 in total

1.  Convergent Evolution of Head Crests in Two Domesticated Columbids Is Associated with Different Missense Mutations in EphB2.

Authors:  Anna I Vickrey; Eric T Domyan; Martin P Horvath; Michael D Shapiro
Journal:  Mol Biol Evol       Date:  2015-06-23       Impact factor: 16.240

Review 2.  TRPs et al.: a molecular toolkit for thermosensory adaptations.

Authors:  Lydia J Hoffstaetter; Sviatoslav N Bagriantsev; Elena O Gracheva
Journal:  Pflugers Arch       Date:  2018-02-27       Impact factor: 3.657

Review 3.  The naked truth: a comprehensive clarification and classification of current 'myths' in naked mole-rat biology.

Authors:  Rochelle Buffenstein; Vincent Amoroso; Blazej Andziak; Stanislav Avdieiev; Jorge Azpurua; Alison J Barker; Nigel C Bennett; Miguel A Brieño-Enríquez; Gary N Bronner; Clive Coen; Martha A Delaney; Christine M Dengler-Crish; Yael H Edrey; Chris G Faulkes; Daniel Frankel; Gerard Friedlander; Patrick A Gibney; Vera Gorbunova; Christopher Hine; Melissa M Holmes; Jennifer U M Jarvis; Yoshimi Kawamura; Nobuyuki Kutsukake; Cynthia Kenyon; Walid T Khaled; Takefumi Kikusui; Joseph Kissil; Samantha Lagestee; John Larson; Amanda Lauer; Leonid A Lavrenchenko; Angela Lee; Jonathan B Levitt; Gary R Lewin; Kaitlyn N Lewis Hardell; TzuHua D Lin; Matthew J Mason; Dan McCloskey; Mary McMahon; Kyoko Miura; Kazutaka Mogi; Vikram Narayan; Timothy P O'Connor; Kazuo Okanoya; M Justin O'Riain; Thomas J Park; Ned J Place; Katie Podshivalova; Matthew E Pamenter; Sonja J Pyott; Jane Reznick; J Graham Ruby; Adam B Salmon; Joseph Santos-Sacchi; Diana K Sarko; Andrei Seluanov; Alyssa Shepard; Megan Smith; Kenneth B Storey; Xiao Tian; Emily N Vice; Mélanie Viltard; Akiyuki Watarai; Ewa Wywial; Masanori Yamakawa; Elena D Zemlemerova; Michael Zions; Ewan St John Smith
Journal:  Biol Rev Camb Philos Soc       Date:  2021-09-03

4.  Naked mole-rat acid-sensing ion channel 3 forms nonfunctional homomers, but functional heteromers.

Authors:  Laura-Nadine Schuhmacher; Gerard Callejo; Shyam Srivats; Ewan St John Smith
Journal:  J Biol Chem       Date:  2017-12-13       Impact factor: 5.157

5.  Adaptive sequence convergence of the tumor suppressor ADAMTS9 between small-bodied mammals displaying exceptional longevity.

Authors:  Matthew J Lambert; Christine V Portfors
Journal:  Aging (Albany NY)       Date:  2017-02-26       Impact factor: 5.682

6.  Family Wide Molecular Adaptations to Underground Life in African Mole-Rats Revealed by Phylogenomic Analysis.

Authors:  Kalina T J Davies; Nigel C Bennett; Georgia Tsagkogeorga; Stephen J Rossiter; Christopher G Faulkes
Journal:  Mol Biol Evol       Date:  2015-08-29       Impact factor: 16.240

7.  Expression of acid-sensing ion channels and selection of reference genes in mouse and naked mole rat.

Authors:  Laura-Nadine Schuhmacher; Ewan St John Smith
Journal:  Mol Brain       Date:  2016-12-13       Impact factor: 4.041

8.  Limited Evidence for Parallel Molecular Adaptations Associated with the Subterranean Niche in Mammals: A Comparative Study of Three Superorders.

Authors:  Kalina T J Davies; Nigel C Bennett; Chris G Faulkes; Stephen J Rossiter
Journal:  Mol Biol Evol       Date:  2018-10-01       Impact factor: 16.240

Review 9.  Evolution of acid nociception: ion channels and receptors for detecting acid.

Authors:  Luke A Pattison; Gerard Callejo; Ewan St John Smith
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-09-23       Impact factor: 6.237

Review 10.  Independent evolution of pain insensitivity in African mole-rats: origins and mechanisms.

Authors:  Ewan St John Smith; Thomas J Park; Gary R Lewin
Journal:  J Comp Physiol A Neuroethol Sens Neural Behav Physiol       Date:  2020-03-23       Impact factor: 1.836

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