Arturo Narros1, Angel J Moreno2, Christos N Likos1. 1. Faculty of Physics, University of Vienna , Boltzmanngasse 5, A-1090 Vienna, Austria. 2. Centro de Física de Materiales (CSIC, UPV/EHU) and Materials Physics Center MPC , Paseo Manuel de Lardizabal 5, E-20018 San Sebastián, Spain ; Donostia International Physics Center , Paseo Manuel de Lardizabal 4, E-20018 San Sebastián, Spain.
Abstract
We investigate, by means of Monte Carlo simulations, the role of ring architecture and topology on the relative sizes of two interacting polymers as a function of the distance between their centers-of-mass. As a general rule, polymers swell as they approach each other, irrespectively of their topologies. For each mutual separation, two identical linear polymers adopt the same average size. However, unknotted rings at close separations adopt different sizes, with the small one being "nested" within the large one over long time intervals, exchanging their roles in the course of the simulation. For two rings of different architectures and identical polymerization degree, the knotted one is always smaller, penetrating the unknotted one. On the basis of these observations, we propose a phenomenological theory for the effective interactions between rings, modeling them as unequal-sized penetrable spheres. This simple approximation provides a good description of the simulation results. In particular, it rationalizes the non-Gaussian shape and the short-distance plateau observed in the effective potential between unknotted ring polymers and pairs of unequal-sized unknotted/knotted ones. Our results demonstrate the crucial role of the architecture on both the effective interactions and the molecular size for strongly interpenetrating polymers.
We investigate, by means of Monte Carlo simulations, the role of ring architecture and topology on the relative sizes of two interacting polymers as a function of the distance between their centers-of-mass. As a general rule, polymers swell as they approach each other, irrespectively of their topologies. For each mutual separation, two identical linear polymers adopt the same average size. However, unknotted rings at close separations adopt different sizes, with the small one being "nested" within the large one over long time intervals, exchanging their roles in the course of the simulation. For two rings of different architectures and identical polymerization degree, the knotted one is always smaller, penetrating the unknotted one. On the basis of these observations, we propose a phenomenological theory for the effective interactions between rings, modeling them as unequal-sized penetrable spheres. This simple approximation provides a good description of the simulation results. In particular, it rationalizes the non-Gaussian shape and the short-distance plateau observed in the effective potential between unknotted ring polymers and pairs of unequal-sized unknotted/knotted ones. Our results demonstrate the crucial role of the architecture on both the effective interactions and the molecular size for strongly interpenetrating polymers.
Molecular architecture
and topology have a deep impact in the physical properties of polymer
solutions and melts. An archetypical example is that of ring polymers.
The simple operation of joining permanently the two ends of a linear
chain strongly affects its thermodynamic and dynamic properties. To
cite a few, some striking differences between rings and their linear
counterparts with identical chemical composition
and degree of polymerization are (a) rings polymers in solution exhibit
a different θ-point than their linear counterparts,[1,2] (b) the stress relaxation modulus of melts of entangled rings does
not exhibit the usual plateau regime characteristic of their linear
counterparts, but a broad power-law decay,[3] and (c) the effective potential Veff(R) between rings in solution is non-Gaussian,[4,5] in contrast to the effective Gaussian interaction between linear
chains.[5−16]Coarse-graining is a powerful methodology to investigate the
physical properties of polymer solutions. By removing most of the
internal degrees of freedom and retaining a few ones (usually the
three coordinates of the center-of-mass), the macromolecular solution
is reduced to an effective fluid of ultrasoft particles. The investigation
of the effective fluid provides an efficient and economical route
toward the structural and thermodynamic properties of the real solution.[17,18] Since macromolecular centers-of-mass are allowed to coincide without
violating excluded-volume interactions between monomers, the effective
ultrasoft potential is bounded; i.e., it does not diverge at any separation
between the centers-of-mass. The first investigation on effective
potentials for polymers in solution was focused in linear chains.
Computer simulations confirmed the Gaussian functional form of the
potential[5−16] put forward by early theoretical approaches[8,19] and
by renormalization-group arguments.[9]During the past years, a series of computational works have investigated
the effective potentials Veff(R) between ring polymers in good solvent conditions, where R stands for the distance between their centers-of-mass.
As mentioned above, the effective potential carries the signature
of the ring architecture and exhibits a non-Gaussian profile,[4,5] unlike the Gaussian potential found for their chemically identical
linear counterparts. The qualitative features of the effective potential
in good solvent are independent of the specific microscopic interactions
between monomers. Very recently, the same features have also been
observed for semiflexible rings, confirming the universality of the
intrinsically non-Gaussian character of the interaction.[20] This includes a “plateau” at short
separation between centers-of-mass and, for small molecular weights,
a minimum at zero separation. A consequence of the latter is the formation
of cluster crystals in the effective fluid at high densities.[21,22] However, these phases are predicted for densities far beyond the
overlap concentration, where intervening many-body effects alter the
effective interaction derived in the limit of high dilution. Indeed,
flexible ring polymers progressively shrink in the concentrated regime,
a feature that prevents the formation of clusters in the real solution,[5] and the shrinking of their size with concentration
above the overlap density has been found to follow a stronger power
law than that of their linear counterparts.[23,24] In the case of semiflexible rings, shrinking involves a strong energetic
penalty. Thus, they are weakly deformed and even swell by increasing
concentration, which favors interpenetration and clustering. However,
the clusters in the real solution have a strongly elongated, anisotropic
character, different from the isotropic structure predicted by the
effective potential.[20] This suggests that
the mutual orientation between semiflexible rings plays a crucial
role in the effective interaction, and a formulation only in terms
of the centers-of-mass is incomplete. Having noted this, the effective
potentials for both flexible and semiflexible rings still provide
an accurate description of the correlations between centers-of-mass
from high dilution up to the overlap concentration ρ*. Even
a semiquantitative description is achieved at densities somewhat higher
than ρ*.[5,20]Several theoretical works
have separated the effective interaction between ring polymers into
a topological and a self-avoidance contribution. This was first proposed
by Frank-Kamenetskii et al.[25] Later, Tanaka[26] and Iwata[27] reproduced
the plateau feature of Veff(R) by analytical calculations, combining Gaussian statistics of the
intramolecular conformations with the Gaussian linking number. Bohn
and Heermann[4] and Hirayama,[28] by using on-lattice and off-lattice simulations,
respectively, demonstrated the relatively low influence that the topological
contribution has on Veff(R) at overlapping configurations. In particular, Hirayama[28] showed that actually the topological contribution
was strongly coupled to the self-avoidance parameter.Little
attention has been paid to a feature that may play a crucial role
in the qualitative differences between the effective potentials of
rings and linear chains. This is the effect of architecture on the
polymer conformations at overlapping configurations. Indeed, the typical
conformations should determine the number of contacts between monomers,
and consequently the value of the effective potential, at each separation
between centers-of-mass. In this article we investigate this feature
in detail. We find that polymers swell as they approach each other.
However, whereas two identical linear polymers adopt roughly the same
average size, identical unknotted rings at close separations adopt
different sizes, with the small one being “nested” within
the large one over long time intervals, exchanging their roles in
the course of the simulation. For two rings of different topologies
and identical polymerization degree, the knotted one is always smaller,
penetrating the unknotted one. On the basis of these results, we propose
a simple yet accurate theory for the effective interaction between
rings, modeling them as unequal penetrable spheres. This picture provides
a good description of the simulation results, and it rationalizes
the non-Gaussian shape and the short-distance plateau observed in
the effective potential for ring polymers.The article is organized
as follows: In section 2 we give simulation
details and define size parameters characterizing polymer conformations.
In section 3 we present results for effective
potentials and size parameters, for various lengths and topologies
of the two polymers. In section 4 we introduce
the theoretical approach for the effective interaction and compare
theoretical predictions with the simulation results. Conclusions are
given in section 5.
Simulation
Model and Size Parameters
We have computed the effective
potential Veff(R) for
the interaction between two polymers A and B as a function of the
distance between their centers-of-mass, R. The choice
of the latter as effective coordinates to describe the whole polymer
is despite its appeal due to symmetry, an arbitrary one. Indeed, linear
polymers can be coarse-grained in a number of ways, and although the
center-of-mass choice is the most common one,[6−12,14−16] the end monomer
or the central monomers have also been employed as effective coordinates
in the past.[13] Similarly, in a recent work
the monomers of closest approach between two rings have been used
to coarse-grain the polymers,[29] a choice
that results in a logarithmically diverging, entropic repulsion between
the rings—a feature common also to linear and star polymers.[17]Each of the two polymers in this work
has linear or ring topologies, and in the latter case they can be
knotted or unknotted. By denoting their topology and polymerization
degree as τ and N, respectively, with i ∈ {A, B}, the effective potential is a function of all the
former parameters, i.e., Veff = Veff(R,τA,NA,τB,NB). The topological index assumes, in this work, values τ
∈ {L, 01, 31}, where L stands for the linear chain topology, 01 for
the unknotted rings (trivial knots), and 31 for the trefoil
knot.We employed for all polymers examined in this work a hard-sphere-tether
model to describe intermonomer interactions and connectivity. Monomers
are modeled as hard spheres of diameter σ and the connections
among them are implemented as threads of maximal surface-to-surface
extension δσ (δ > 1), as in ref (5). Accordingly, the monomer–monomer
interaction Vmm(r) and
the bonding interaction Vbond(r), where r is the distance between the
monomer centers, read asacting among all monomers andfor connected ones. We prevent
crossing of the bonds of the rings, and thus conservation of all the
intra- and intermolecular topological constraints (no modification
of the knotedness and no accidental catenations), by setting δ
= 0.2 and choosing the Monte Carlo displacement step to be less than
or equal to δ. We have explicitly checked the avoidance of spurious
catenations by creating a pair of catenated rings, pulling each of
them with opposite forces and verifying that they never disentangle,
no matter how strong the applied force is.The moves employed
in our Monte Carlo simulations were mostly simple attempts to move
single monomers of the polymers. We define as a Monte Carlo cycle
a set of N single-monomer attempted moves, where N denotes the degree of polymerization of the molecule.
To make sure that configurations on which measurements have been taken
are fully decorrelated from one another, we make, for the rings, one
measurement in every Nmeas = 5000 MC cycles
and we denote Nmeas as one MC measurement
cycle. Typical simulation runs for the rings were Nrun = 5 × 107 MC cycles long, both for
isolated polymers and for interacting ones. For linear chains, the
extension of the measurement cycles was shorter, Nmeas = 1000 MC cycles, since in this case bond crossing
is allowed, and thus we can apply bigger monomer displacements, resulting
into faster decorrelation of the configurations. The quantities measured
were the gyration radii for different interpolymer separations as
well as the effective interaction potential Veff(R) as a function of the separation R between the polymers’ centers-of-mass.The
effective potentials were determined from Monte Carlo simulations
by using the umbrella-sampling technique, as explained in ref (5), to measure the probability P(R) of finding the centers-of-mass of
the rings at separation R, deriving then the effective
pair potential asTo ensure
proper sampling throughout the range of separations R/Rg0 ∈ [0, 12], the whole R interval was
split into 20–30 windows of width w ≅
0.3Rg0 each, where Rg0 is defined in eq 6. Results from successive windows were matched as described in ref (5). Occasionally, small rigid
rotations of the whole molecule for large distances R were also employed in MC; however, pivoting moves, such as crankshaft, were not implemented for the rings, given the
small size of the molecules and, therefore, the low probability of
acceptance for small values of R.As will be
shown in the following, the specific architectures of the two polymers
have also a deep impact on their size at close separation. Consider,
for instance, the radius of gyration Rg, of the polymer i, while the center-of-mass
of the other polymer, j ≠ i and i, j ∈ {A, B}, is kept
at a distance R from the center-of-mass of polymer i. Denoting with r, k = 1, 2, ..., N, the instantaneous positions of the
monomers of polymer i, we havewhere the
angular brackets ⟨···⟩ denote a statistical
average over all polymer conformations and the subscript (R, j) is a reminder of the existence of
a fluctuating polymer j at distance R from the polymer i. Equation 4 serves also as the definition of the instantaneous radius of gyration R̂g of the polymer.It becomes evident that Rg, depends not only on the architecture and size of the polymer i itself but also on the same characteristics of polymer j and on the separation between the two: Rg, = Rg,(R; τA, NA, τB, NB). We further define the unperturbed radius of gyration Rg0(τ, N) of the polymer i as its value at infinite separation from polymer j:In the following, results
will be presented by normalizing the separation R by the arithmetic mean, Rg0, of the unperturbed radii of gyration
of the two polymers:Finally, we order the polymers at every separation
into a smaller and a larger one, according to the value of their gyration
radius, and we use the greek index γ ∈ {<,>} to
denote the two, respectively. A useful quantity that will be discussed
is the swelling ratio of the polymer γ, defined asi.e., as the ratio between the perturbed and
the unperturbed size of the polymer. As will be demonstrated, this
quantity has also a strong dependence on the specific topologies of
the two polymers. Having established the dependence of the former
quantities on τA,B and NA,B, in the following we simplify the notation, leaving the distance R between centers-of-mass as the only explicit parameter.
Results
Results for the effective potentials from our
simulations are shown in Figure 1a. These are
given for several topologies and polymerization degrees of the two
polymers. When both them are linear chains, Veff(R) has a Gaussian shape (black line).
This result is related to the Gaussian character of the distribution
of monomers around their centers-of-mass.[30] Renormalization-group studies have shown that the shape is indeed
of Gaussian form,[9] whereas its amplitude
(i.e., the value it attains at zero separation) has been shown to
be independent of the degree of polymerization,[8] in contrast to earlier, mean-field predictions of Flory
and Krigbaum,[19] who were, nevertheless,
the first to propose such an interaction as early as in 1950. This
potential of mean force has been confirmed by a number of on- and
off-lattice simulations ever since.[5−16] Its shape is universal, i.e., independent of the underlying microscopic
model, when R is scaled with the gyration radius,
provided that the degree of polymerization exceeds a threshold value NL* that depends on the model; for off-lattice models, typically NL* ∼ 100. Its amplitude in this scaling limit is Veff(R=0) ≅ 2kBT. Scaling behavior of Veff(R) has also been found for rings
at N > N0* ∼ 100, though in this case the observed amplitude of the
potential is different, Veff(R=0) ≅ 6kBT.[5] Hence, for a same polymerization degree, the
effective potential between ring polymers is much more repulsive than
for their linear counterparts. Another remarkable difference with
the case of linear chains is that Veff(R) for unknotted polymers does not have a Gaussian
shape.[4,5,28] Instead, it
features a plateau at small separations, and even a minimum at R = 0 for small polymerization degrees N < N0*. This feature is intimately connected to the
typical configurations of interpenetrated rings, in which one ring
adopts an open conformation allowing the other to stay in the center
of the former for long intervals (see below).
Figure 1
(a) Center-of-mass effective Veff(R) for different combinations
of topologies and sizes (see legend). Here, β = (kBT)−1, with kB the Boltzmann constant and T the absolute temperature. (b) Effective potential between the centers-of-mass
of two 01/01 rings resulting from two microscopically
different models (see text) as well as the topological potential between
the same resulting from these models.
(a) Center-of-mass effective Veff(R) for different combinations
of topologies and sizes (see legend). Here, β = (kBT)−1, with kB the Boltzmann constant and T the absolute temperature. (b) Effective potential between the centers-of-mass
of two 01/01 rings resulting from two microscopically
different models (see text) as well as the topological potential between
the same resulting from these models.The plots in Figure 1a further demonstrate
that the non-Gaussian character observed for the effective potential
between rings is not limited to the simplest case of two unknotted
circular polymers but is also found for combinations of different
topologies. This is illustrated there for pairs of rings with the
same N, but distinct topologies 01 and
31. As observed for the case of two unknotted rings, the
potential can exhibit a minimum at R = 0. Interestingly,
for sufficiently large rings (N = 100) we find essentially
the same interaction for distinct rings, τA = 01 and τB = 31, as for identical
unknotted rings τA = τB = 01 (compare red and blue lines). Although N = 100 is already sufficiently large for the effective interaction
between 01 rings to be in the scaling regime, the close
resemblance with the 01/31 interaction is at
this point a matter of coincidence: for a knotted ring, the degree
of polymerization is too small for the knot to be irrelevant. At the
limit N → ∞, knots become weakly localized
in three spatial dimensions:[31] there, we
can surmise that the effects of (simple) knots on the rings will renormalize
away, since their typical size Rk scales
as Rk ∼ N0.75 and therefore Rk/Rg → 0 as N → ∞.The insensitivity of the 01/01 effective potential Veff(R) to the underlying microscopic
model for a degree of polymerization N = 100 is demonstrated
in Figure 1b. In addition to the HS-tethered
model described above, we have also considered 01-ring
polymers consisting of N = 100 soft blobs and renormalized
elastic spring interactions, which result from a coarse-graining of
a large number of underlying monomers.[32] We have repeated the calculation with the soft model, for which
catenations are not excluded a priori, and thus every configuration
has to be checked for its topological legitimacy. Following ref (4), we apply the Gaussian
linking number W as a diagnostic tool for catenations,
and all configurations of catenated rings are thus rejected. Similarly,
the topological potential Vtopo(R) shown in Figure 1b is also insensitive
to the microscopic model details, confirming that N = 100 is a sufficiently large degree of polymerization for 01 rings, leading to universal results for the effective interactions.Insight into the microscopic mechanism leading to the features
observed in the effective potential can be gained by monitoring the
evolution of the size of both rings at full overlap. Figure 2 shows results, plotted against the number of MC
measurement cycles, for the instantaneous radii of gyration of the
two polymers at mutual distance R = 0. All results
correspond to identical degree of polymerization, N = 100, for both rings. The three panels present results for different
combinations of topologies: τA = τB = L in Figure 2a; τA = τB = 01 in Figure 2b; and τA = 01, τB = 31 in Figure 2c. As can
be seen in the latter case, the knotted rings are systematically smaller
than their unknotted counterparts. This is not surprising, since this
is indeed also the case when both polymers are isolated (R → ∞). As expected, polymers with same N and τ (Figure 2a,b) may adopt different
instantaneous sizes, but for long enough times they show the same
average size. However, size fluctuations behave rather differently
for linear and ring polymers. In the case of two identical fully interpenetrated
rings, one is systematically smaller than the other over relatively
long time intervals (Figure 2b). This effect
can be better visualized by smoothing the curves of the instantaneous
values of R̂g’s (black and red) over intervals of 100 MC measurement cycles,
leading to the yellow and blue curves in Figure 2a,b. This feature reflects the fact that for relatively long time
intervals one of the unknotted rings adopts an open configuration,
leaving free space for penetration by the other ring. The exchange
of the roles of the two rings takes place at intervals of the order
of the Rouse time for rings of N = 100.
Figure 2
Instantaneous
value of the radius of gyration R̂g, i = A, B, for two selected polymers
A and B at full interpenetration (R = 0), against
the number of MC measurement cycles for already equilibrated configurations.
In all cases the degree of polymerization is NA = NB = 100 for both polymers.
The topologies of the two polymers are (L, L), (01, 01), and (01,
31) for (a), (b), and (c), respectively. The instantaneous
values R̂g for
each polymer are represented in black and red colors. In the case
of the topologically different rings in (c), black and red lines correspond
to the 01 and 31 ring, respectively. The smooth
yellow and blue lines in (a) and (b) are averages, over intervals
of 100 consecutive points, of the black and red lines, respectively.
Instantaneous
value of the radius of gyration R̂g, i = A, B, for two selected polymers
A and B at full interpenetration (R = 0), against
the number of MC measurement cycles for already equilibrated configurations.
In all cases the degree of polymerization is NA = NB = 100 for both polymers.
The topologies of the two polymers are (L, L), (01, 01), and (01,
31) for (a), (b), and (c), respectively. The instantaneous
values R̂g for
each polymer are represented in black and red colors. In the case
of the topologically different rings in (c), black and red lines correspond
to the 01 and 31 ring, respectively. The smooth
yellow and blue lines in (a) and (b) are averages, over intervals
of 100 consecutive points, of the black and red lines, respectively.Swelling ratios of the two polymers as a function
of the normalized distance between their centers-of-mass. Data are
shown for different combinations of the topologies and polymerization
degrees (see legend). Full symbols joined by solid lines are data
for the large polymer. Empty symbols joined by dashed lines are data
for the small polymer. See text for the definitions of “large”
and “small” polymer.In Figure 3, we show the swelling
ratio αγ(R) as a function
of the distance between centers-of-mass R, for several
combinations of architectures (linear/ring) and topologies (knotedness
of rings). In all cases represented in the figure, the two polymers
have identical N. Dashed lines with empty symbols
correspond to the “small” polymer, whereas solid lines
with filled symbols correspond to the “large” one. In
the case of distinct topologies (01 and 31 rings,
see caption), the “large” and “small”
polymers are the unknotted and knotted ring, respectively. Indeed,
for identical N, 31 rings are on average
smaller than 01 rings. In the case of identical architectures,
“small” and “large” refer to the instantaneously smaller and larger polymer, respectively,
and the averages in eq 7 are calculated according
to this criterion instead of averaging over the same polymer. Indeed,
as illustrated in panels a and b of Figure 2, the identities of the large and small polymer alternate during
the simulation because of intramolecular fluctuations.
Figure 3
Swelling ratios of the two polymers as a function
of the normalized distance between their centers-of-mass. Data are
shown for different combinations of the topologies and polymerization
degrees (see legend). Full symbols joined by solid lines are data
for the large polymer. Empty symbols joined by dashed lines are data
for the small polymer. See text for the definitions of “large”
and “small” polymer.
As expected,
the swelling parameter is equal to unity at long separations, R ≫Rg0, when there is no overlap between the
two polymers. However, by increasing interpenetration (decreasing R), the swelling ratios of the large and small polymer become
rather different. In the case of the mixed topologies, the size of
the small polymer (31 knot) is essentially unperturbed
by interpenetration with the large polymer (unknotted 01 ring). However, the large polymer strongly swells, up to about a
25% at full overlap (R = 0). This effect seems to
be weakly dependent on the degree of polymerization—note the
close agreement between the data sets for 20 ≤ N < 100. These results show that in entropic terms it is more favorable
to swell the unknotted ring, leaving free space to accommodate the
unperturbed knotted ring, than to swell the knotted ring, which would
involve localization of the knot. In the case of the 01/01 pair, both polymers show a significant
swelling at strong interpenetration. However, the swelling ratio is
smaller than for the unknotted rings in the 01/31 pairs. In the case of identical linear chains, the “large”
and “small” polymers are affected almost identically
by interpenetration and show very similar swelling factors, whereas
in the case of 01 rings, it is clear that there is a significant
size discrepancy between the two, in line with the results presented
in Figure 2b. Here, it is worth pointing out
that Bohn and Heermann[4] also calculated
a swelling ratio for two interacting rings, albeit without splitting
them into a smaller and a larger one but rather by averaging over
the two sizes. Our results are in full agreement with those in ref (4): a gradual swelling of
the rings for distances R/Rg0 ≲ 1.5,
reaching a maximum value of ⟨α⟩ ≅ 1.12
at R = 0, has been found there, which compares very
well with our own results in Figure 3. Furthermore,
the analysis of relative orientation between the 01 rings
in ref (4) confirms
our assertion that two interpenetrating rings assume a threading conformation
with nearly perpendicular mutual orientation.Monomer distributions
(density profiles) of the two polymers. Solid and dashed lines are
data for full interpenetration (R = 0) and for infinite
separation (R → ∞), respectively, with R the distance between the centers-of-mass of the polymers.
Black and red color codes correspond to the large and small polymer,
respectively. In all cases the polymerization degree is N = 100. Panel a shows data for two linear chains, (L, L). Panel b shows data for two unknotted rings,
(01, 01).We have also calculated the local density of monomers, ρ(r), where r is the distance to the center-of-mass
of the polymer. Figure 4 shows results for
ρ(r) when two identical polymers of N = 100 monomers are fully interpenetrated (R = 0, solid lines) or isolated (R → ∞,
dashed lines). Panels a and b show results for linear chains and unknotted
rings, respectively. As in the case of the swelling ratio for identical
polymers (see above), we present results by performing averages over
the instantaneously “large” (black
lines) and “small” polymer (red lines). Full interpenetration
affects the monomer densities of linear chains and rings in a very
different way. A moderate distortion of the unperturbed density profile
(R → ∞) is found for the linear chains,
increasing the intensity at long r. A similar effect
is found for the small ring in the case of fully interpenetrated rings.
However, a strong distortion is found for the large ring. The monomer
density of the large ring at full overlap does not show the monotonous
decay observed for all the isolated polymers (R →
∞) and for the rest of the cases at R = 0
that are shown in Figure 4. Instead, it shows
a maximum at a finite distance from the center-of-mass. This feature
is consistent with the observations for the swelling ratio (see Figure 3) and reflects the open conformations adopted by
the large ring, leaving free space for accommodating the small ring.
Although we do not deal in this work with knots of higher complexity,
it is worth mentioning that for an interacting 51/51 pair of N = 100 monomers each, the density
profiles at R → ∞ and those at R = 0 are very different, an effect of the fact that this
degree of polymerization is too low. Consequently, about one-third
of the monomers are within the knot, and they cause large deviations
from the universal behavior expected for N →
∞. The same holds to a lesser degree for 31/31 pairs with N = 100 monomers each as well.
The theoretical model in section 4 does not,
therefore, apply to these cases.
Figure 4
Monomer distributions
(density profiles) of the two polymers. Solid and dashed lines are
data for full interpenetration (R = 0) and for infinite
separation (R → ∞), respectively, with R the distance between the centers-of-mass of the polymers.
Black and red color codes correspond to the large and small polymer,
respectively. In all cases the polymerization degree is N = 100. Panel a shows data for two linear chains, (L, L). Panel b shows data for two unknotted rings,
(01, 01).
All the results presented in
this section reveal an interesting phenomenon for all polymer architectures:
the swelling of at least one of the two polymers at full interpenetration,
adapting its size and shape to accommodate the other polymer. This
feature, which may lead to a minimum at R = 0 for Veff(R), can be seen as a “soft
depletion effect” of the monomers from the centers of mass
of the ring to which they belong. In the case of the ring polymers,
the depletion is induced by the monomers of the small polymer on those
of the large one. Instead, soft depletion is a mutual effect for linear
chains (both chains swell, see Figure 3).
Theoretical Model of the Ring Polymer Effective Potential
Following the ideas of Grosberg et al.,[8] we put forward in this section a simple theoretical approach that
is able to describe, even semiquantitatively, the simulation results
for the effective interaction Veff(R) between ring polymers. Consider two identical polymers,
each with monomer density profiles ρ(r) around
their respective centers-of-mass. The case of dissimilar polymers
can be treated in a similar fashion (see below). We introduce a corresponding
dimensionless shape function f(x), where x is the distance from the polymer center-of-mass
scaled by its unperturbed radius of gyration, Rg0. For simplicity
we adopt the notation Rg0 = Rg in
the following, and thus x = r/Rg. The density profile ρ(r) and the shape function f(x) are
related asEvidently,
4π∫0∞x2f(x) dx = 1. We assume an interaction between any two
given monomers, at positions r1 and r2, of the excluded volume, contact type: vmm(r1 – r2) = v0kBTδ(r1 – r2). The excluded-volume parameter is v0 ∝ σ3, where σ is the monomer
size. Thus, this interaction corresponds to the case of polymers in
athermal solvents, as those investigated here. The simplest approach
to the calculation of the effective interaction between the two polymers,
with their centers-of-mass held at separation R, is a
mean-field approximation (MFA). This expresses the effective potential
as an overlap integral of the two density profiles, weighted by the
excluded-volume interaction:with some adimensional
prefactor of order unity. Using eq 8, we readily
obtainwhere D ≡ R/Rg is the normalized distance
between the centers-of-mass of the two polymers. The quantity n = N/Rg3 is the average
monomer density within a polymer of volume Vp ∝ Rg3, and f∗f denotes the convolution of the two shape functions. Because
of the assumed scaling behavior of f (see eq 8), this convolution is independent of the polymer
size and also of order unity at full interpenetration (D = 0).Equations 9 and 10 were first put forward by Flory and Krigbaum[19] for the derivation of the effective interaction between
linear chains. By assuming a Gaussian distribution of the monomers
around the centers-of-mass of two identical linear chains, the former
scheme gave rise to a Gaussian effective interaction—the celebrated
Flory–Krigbaum potential. However, the obtained prefactor of
the potential was erroneous: as it is clear from eq 10 in association with the relation n = N/Rg–3 ∝ N1–3v and the well-known scaling Rg ∝ Nν for self-avoiding
chains (with ν ≅ 3/5 the Flory exponent), the so-obtained
amplitude of the potential, Veff(D = 0), scales as ∼N2–3 ≅ N1/5. If this
result were correct, two linear chains would become more impenetrable
by increasing their degree of polymerization (becoming fully impenetrable
for N → ∞). However, a series of theoretical
and simulation studies have demonstrated that although the shape of
the effective potential does fulfill the predicted Gaussian function,
its amplitude is independent of N for sufficiently long chains (N > NL*).[5−16] Rather than a ∼N1/5 dependence
of the potential amplitude, it is found that Veff(D=0) ≅ 2kBT.The reasons lying behind the Veff(D=0) ∼ N1/5 erroneous prediction were clarified by Grosberg et
al.[8] In eq 10, the
mean-field approximation assigns a probability pcMFA to each of the N monomers of a given polymer to have contacts with the
monomers of the other, this probability being proportional to the
packing fraction of the second one, Thereafter, a free energy cost
proportional to kBT times
the number of contacts, N(nσ3), arises. The convolution (f∗f)(D) simply corrects for the overlap volume.
This approach is, however, flawed in one very important way: in reality,
monomer connectivity effects reduce the contact probability
to[8]and thus the correct expression for the effective
potential readsSince n ∝ N1–3ν (see above), and for large N the scaling function f(x) only depends on the polymer architecture,
it follows from eq 12 that in that limit Veff(D) scales as ∼ N0; i.e., it becomes independent of N. In particular, for linear chains f(x) is a Gaussian function, and from eq 12 the
well-known Gaussian interaction potential between self-avoiding chains
comes out, with an amplitude Veff(D=0) of order kBT. It is worth mentioning, however, that eq 10 has been shown to be quantitatively accurate for the case of interacting
dendrimers.[33,34] In such systems the dense, regularly
branched architecture of the molecules serves to restore the validity
of the expression pcMFA ∝ nσ3. Thus, the effective potential between the centers-of-mass of dendrimers does depend on N, becoming steeper as the
generation number grows.In the following, we make use of eq 12 to obtain effective interactions for ring polymers,
with the appropriate modifications of the shape functions f(x) to take into account the effect of
the polymer architecture on its size and shape. Before introducing
the details of the model, we anticipate that eq 12 itself can rationalize the difference between the amplitudes Veff(D=0) of the effective potential
for linear chains (≅2kBT) and for unknotted rings (≅6kBT). Thus, by using the relationshipwith some topology-dependent coefficient
λτ, in conjunction with eq 12 and n = NRg–3, we
findWe assume that the major difference in the
amplitude of the effective potential for different polymer architectures
arises from the factor λτ–3/(3 and not from the convolution of the different shape functions at
full interpenetration. With this approximation, the ratio Δ
between the amplitudes of the effective potentials at D = 0 of the 01 rings and linear chains is given byFor the tethered
model at hand, extensive simulations (results not shown) yield the
values λL = 0.533 and λ0 = 0.406. By inserting these in eq 15 together
with the precise value ν = 0.588 for self-avoiding chains, we
find Δ = 2.9. This is indeed very close to the simulation result
(Δ ≈ 3).Consider now the application of eq 12 for the case of two different rings of sizes R1 and R2 < R1. As discussed in section 3, this difference in size can arise in two different ways:
first, if the two polymers have different architectures and/or degrees
of polymerization (one is on average smaller than the other even at
infinite separation), and second, if the two polymers are identical
in N and τ, but one swells to facilitate penetration
by the other. In either case, we denote D ≡ R/Rg0 and define R> ≡ R1/Rg0 and R< ≡ R2/Rg0. It is also
useful to define the sum and the difference between the sizes as R± ≡ R> ± R< as well as the corresponding
shape functions f>(x) and f<(x) of the
large and small polymers, respectively. Although the sizes R> and R< do
depend on the separation D, this dependence is weak
for strong overlaps (D ≪ 1). To simplify things,
we thus keep them fixed for all distances at the values they have
at D = 0 and generalize eq 12 towhere we have now omitted the term (v0/σ3)N(nσ3)1/(3, which scales
as N0 (see above) and thus provides simply
a constant factor of order unity.Scheme of the proposed model for the effective
interaction between ring polymers. These are represented as two fully
penetrable spheres of different radii, R> (light gray) and R< (dark gray).
The accompanying plot shows the dependence of their overlap volume,
assumed to be proportional to their effective interaction βVeff(D), on the separation D between their centers-of-mass. The effective potential
is given by eq 19. For distances D smaller than R–, there is full
overlap between both spheres (see dotted circle representing the small
ring at D = R–). For distances larger than D = R+, the overlap volume vanishes.The next approximation is inspired by the results of Figure 4b. There, it can be seen that for ring polymers
the monomer distribution ρ(r) strongly deviates
from the Gaussian shape observed for linear chains (Figure 4a). Instead, by increasing r from
zero it shows a roughly flat, or even increasing profile, until a
pronounced decay is found for longer distances. Thus, we make a rather
crude approximation for the shape functions of the rings, by modeling
them as step functions:where again x ≡ r/Rg0, γ stands for > or < (large and small ring, respectively),
and Θ(z) is the Heaviside step function. The
shape functions defined in eq 17 fulfill the
normalization conditionAccording to the definition of R>,< (see above), the right-hand side of eq 18 is identical to unity only if the two rings have equal sizes
that do not change with separation. Obviously this is not the case,
as has been shown in Figure 3. From eqs 16 and 17 we obtain the effective
interaction as the overlap volume of spheres of unequal size, i.e.where U0 is a constant of order unity
and the values of the parameters R– and R+ are determined as it will be
specified below. The scheme of Figure 5 illustrates
the relation between the shape of the effective interaction and the
degree of overlap of the two spheres. As the separation D diminishes below R+, the overlap increases.
Full overlap is obtained at D = R–, and this overlap remains invariant for all separations D < R–, leading to
a constant value of Veff(D) in that range. We can thus rationalize the plateau region observed
in the effective potential as a direct consequence of the disparity
in the sizes of the two rings at strong interpenetration. Even if
the two rings have the same architecture and the same N, they adopt the (exchanging) roles of a large and a small one when
their centers of mass are sufficiently close. The polymer architecture
forces one of the two rings to strongly swell, accommodating the other.
The flatness of Veff(D) at small D is then a direct consequence of this
property, and it is absent for linear chains, which swell together
at strong center-of-mass overlaps. Indeed, the latter feature a Gaussian
effective potential, with a negative curvature at D = 0.
Figure 5
Scheme of the proposed model for the effective
interaction between ring polymers. These are represented as two fully
penetrable spheres of different radii, R> (light gray) and R< (dark gray).
The accompanying plot shows the dependence of their overlap volume,
assumed to be proportional to their effective interaction βVeff(D), on the separation D between their centers-of-mass. The effective potential
is given by eq 19. For distances D smaller than R–, there is full
overlap between both spheres (see dotted circle representing the small
ring at D = R–). For distances larger than D = R+, the overlap volume vanishes.
Now we test the analytical expression of eq 19 by comparing with the simulation results for the effective potentials
of rings. The equation contains three free parameters: R<, R>, and U0. However, there are strong constrains for their possible
values. First, R> and R< should be consistent with the normalized radii of
gyration of the large and small rings at full overlap (D = 0), which are independently obtained from the simulations. Second,
in a scaling theory any missing coefficients (the constant U0 in our case) should be numbers of order unity.
Thus, we have fitted the simulation results for Veff(D) to eq 19, employing the Levenberg–Marquardt algorithm,[35] and constraining R< and R> to lie within small domains
around the simulation values for the normalized radii of gyration.
The obtained fit parameters are shown at the last three columns of
Table 1, whereas the simulation values of the
sizes are shown at the third and fourth columns.
Table 1
Ring Topologies and Lengths Considered in
the Simulations and the Theory of the Effective Interaction; Sizes
of the Rings at Full Overlap (D = 0), As Obtained
from the Simulations; Parameters of the Theoretical Model for the
Effective Interaction, Obtained by Fitting the Simulation Results
of Veff(D) to eq 19
polymer topologies and lengths
polymer sizes
(simulation)
model parameters (theory)
τA/τB
NA = NB = N
R>
R<
R>
R<
U0
01/01
100
1.22
1.02
1.419
1.000
1.434
01/31
100
1.38
0.90
1.363
0.871
2.101
01/31
80
1.39
0.89
1.339
0.833
2.804
01/31
20
1.46
0.85
1.373
0.905
3.216
The theoretical
results for the effective interaction between rings are shown in Figure 6, where they are also compared with the simulation
results. Semiquantitative agreement is found in all cases, and this
is better for the case of mixed topologies (τA =
01,τB = 31) than for identical
unknotted rings (τA = τB = 01). The main feature of the effective interaction between 01/01 and 01/31 ring polymer
pairs, i.e., the plateau region for 0 ≤ D ≲
0.5, is nicely reproduced. For the case of mixed topologies a very
good description is also achieved up to separations D ≲ 1.7. Moreover, the obtained values for the fit parameters R< and R> are
in very good agreement with the normalized radii directly provided
by the simulations (see Table 1), especially
for the 01/31 combinations. Consistently, the
prefactor U0 in eq 19 is of order unity in all cases. The main quantitative differences
between the theoretical and simulation results of Veff are observed at distance D ≳
1.7. The model overestimates the late decay of the actual potential,
which exhibits a longer tail. This discrepancy is a consequence of
the oversimplification of the theoretical density profile, which has
been modeled by a penetrable sphere with a sharp boundary, i.e., the
step function in eq 17. Of course, the description
of the actual effective potentials—e.g., accounting also for
the local minimum at D = 0—might be improved
by relaxing some of the rough approximations introduced in our model.
More than to provide an accurate description, the purpose of our simple
approach is to provide a direct connection between the particular
shape of the effective potential and the architecture of ring polymers—which
force the large ring to swell in order to accommodate the small one
at full interpenetration.
Figure 6
Effective potentials between ring polymers for
various topologies and lengths (see legends). Black lines: simulation
results. Red lines: theoretical descriptions by fitting to eq 19. The obtained fit parameters can be read off from
the last three columns of Table 1.
Effective potentials between ring polymers for
various topologies and lengths (see legends). Black lines: simulation
results. Red lines: theoretical descriptions by fitting to eq 19. The obtained fit parameters can be read off from
the last three columns of Table 1.
Conclusions
We have
pointed out the differences in the effective potential between linear
chains and ring polymers and investigated their microscopic origin.
Swelling behavior is found for one or both polymers at strong interpenetration,
i.e., at small separation between their centers-of-mass. However,
the combination of polymer architecture and topological constraints
have a very different effect on the swelling of linear and ring polymers.
Two interpenetrating linear chains have the same average size, whereas
in the case of ring polymers a depletion effect of the monomers of
one ring from its own center of mass is found. One of the rings adopts
an open conformation, leaving free space for accommodating the other
one, which also swells with respect to its undistorted conformation
but much less than the former. Thus, at full interpenetration the
average sizes of the two rings are different, even if both rings have
the same topology and degree of polymerization. We have modeled this
depletion of monomers from the centers-of-mass of the rings by treating
both rings as overlapping spheres of different size and considering
connectivity and self-avoidance effects for the probability of monomer
contacts. This simple approach provides a semiquantitative description
of the effective potential for ring polymers and rationalizes the
qualitative differences between the latter and the Gaussian potential
for linear chains. Future work should focus on the possibilities to
extend these considerations to knotted rings of complicated knotedness
and to (semiflexible) rings carrying intramolecular stiffness.