Literature DB >> 24347328

Macrocyclic polyoxazoles as G-quadruplex ligands.

Keisuke Iida1, Kazuo Nagasawa.   

Abstract

This review deals with recent progress in the synthesis and evaluation of our telomestatin-inspired macrocyclic polyoxazoles as G-quadruplex (G4) ligands. The hexaoxazole derivatives (6OTDs) interact with and stabilize G4-forming oligonucleotides, depending upon the character of the side chain functional groups. Cationic functional groups are particularly effective due to their secondary interaction with phosphate in the DNA backbone. On the other hand, heptaoxazole derivatives (7OTDs) showed potent G4-binding and stabilization activity regardless of the functional groups on the side chain. A caged G4 ligand, Y2Nv2-6OTD (7), and a fluorescent G4 ligand, L1BOD-7OTD (13), have been synthesized.
Copyright © 2013 The Chemical Society of Japan and Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  DNA structures; G-quadruplexes; fluorescent probes; polyoxazoles; telomestatin

Mesh:

Substances:

Year:  2013        PMID: 24347328     DOI: 10.1002/tcr.201300015

Source DB:  PubMed          Journal:  Chem Rec        ISSN: 1528-0691            Impact factor:   6.771


  10 in total

1.  A force sensor that converts fluorescence signal into force measurement utilizing short looped DNA.

Authors:  Golam Mustafa; Cho-Ying Chuang; William A Roy; Mohamed M Farhath; Nilisha Pokhrel; Yue Ma; Kazuo Nagasawa; Edwin Antony; Matthew J Comstock; Soumitra Basu; Hamza Balci
Journal:  Biosens Bioelectron       Date:  2018-08-31       Impact factor: 10.618

2.  A single molecule study of a fluorescently labeled telomestatin derivative and G-quadruplex interactions.

Authors:  Parastoo Maleki; Yue Ma; Keisuke Iida; Kazuo Nagasawa; Hamza Balci
Journal:  Nucleic Acids Res       Date:  2016-11-29       Impact factor: 16.971

3.  Structure-Dependent Binding of hnRNPA1 to Telomere RNA.

Authors:  Xiao Liu; Takumi Ishizuka; Hong-Liang Bao; Kei Wada; Yuma Takeda; Keisuke Iida; Kazuo Nagasawa; Danzhou Yang; Yan Xu
Journal:  J Am Chem Soc       Date:  2017-05-24       Impact factor: 15.419

4.  Identification of G-quadruplex structures that possess transcriptional regulating functions in the Dele and Cdc6 CpG islands.

Authors:  Daniyah H Bay; Annika Busch; Fred Lisdat; Keisuke Iida; Kazunori Ikebukuro; Kazuo Nagasawa; Isao Karube; Wataru Yoshida
Journal:  BMC Mol Biol       Date:  2017-06-27       Impact factor: 2.946

5.  A G-quadruplex structure at the 5' end of the H19 coding region regulates H19 transcription.

Authors:  Mitsuko Fukuhara; Yue Ma; Kazuo Nagasawa; Fumiko Toyoshima
Journal:  Sci Rep       Date:  2017-04-03       Impact factor: 4.379

6.  Identification of G-quadruplex clusters by high-throughput sequencing of whole-genome amplified products with a G-quadruplex ligand.

Authors:  Wataru Yoshida; Hiroki Saikyo; Kazuhiko Nakabayashi; Hitomi Yoshioka; Daniyah Habiballah Bay; Keisuke Iida; Tomoko Kawai; Kenichiro Hata; Kazunori Ikebukuro; Kazuo Nagasawa; Isao Karube
Journal:  Sci Rep       Date:  2018-02-15       Impact factor: 4.379

7.  Linear consecutive hexaoxazoles as G4 ligands inducing chair-type anti-parallel topology of a telomeric G-quadruplex.

Authors:  Shogo Sasaki; Yue Ma; Takumi Ishizuka; Hong-Liang Bao; Takatsugu Hirokawa; Yan Xu; Masayuki Tera; Kazuo Nagasawa
Journal:  RSC Adv       Date:  2020-12-07       Impact factor: 4.036

8.  Selective recognition and stabilization of new ligands targeting the potassium form of the human telomeric G-quadruplex DNA.

Authors:  Yi-Hwa Lin; Show-Mei Chuang; Pei-Ching Wu; Chun-Liang Chen; Sivakamavalli Jeyachandran; Shou-Chen Lo; Hsu-Shan Huang; Ming-Hon Hou
Journal:  Sci Rep       Date:  2016-08-11       Impact factor: 4.379

9.  Quantifying the impact of small molecule ligands on G-quadruplex stability against Bloom helicase.

Authors:  Parastoo Maleki; Golam Mustafa; Prabesh Gyawali; Jagat B Budhathoki; Yue Ma; Kazuo Nagasawa; Hamza Balci
Journal:  Nucleic Acids Res       Date:  2019-11-18       Impact factor: 16.971

Review 10.  Major Achievements in the Design of Quadruplex-Interactive Small Molecules.

Authors:  Eduarda Mendes; Israa M Aljnadi; Bárbara Bahls; Bruno L Victor; Alexandra Paulo
Journal:  Pharmaceuticals (Basel)       Date:  2022-02-28
  10 in total

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