Literature DB >> 24347253

Travelling waves in hybrid chemotaxis models.

Benjamin Franz1, Chuan Xue, Kevin J Painter, Radek Erban.   

Abstract

Hybrid models of chemotaxis combine agent-based models of cells with partial differential equation models of extracellular chemical signals. In this paper, travelling wave properties of hybrid models of bacterial chemotaxis are investigated. Bacteria are modelled using an agent-based (individual-based) approach with internal dynamics describing signal transduction. In addition to the chemotactic behaviour of the bacteria, the individual-based model also includes cell proliferation and death. Cells consume the extracellular nutrient field (chemoattractant), which is modelled using a partial differential equation. Mesoscopic and macroscopic equations representing the behaviour of the hybrid model are derived and the existence of travelling wave solutions for these models is established. It is shown that cell proliferation is necessary for the existence of non-transient (stationary) travelling waves in hybrid models. Additionally, a numerical comparison between the wave speeds of the continuum models and the hybrid models shows good agreement in the case of weak chemotaxis and qualitative agreement for the strong chemotaxis case. In the case of slow cell adaptation, we detect oscillating behaviour of the wave, which cannot be explained by mean-field approximations.

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Year:  2013        PMID: 24347253     DOI: 10.1007/s11538-013-9924-4

Source DB:  PubMed          Journal:  Bull Math Biol        ISSN: 0092-8240            Impact factor:   1.758


  9 in total

1.  The pseudo-compartment method for coupling partial differential equation and compartment-based models of diffusion.

Authors:  Christian A Yates; Mark B Flegg
Journal:  J R Soc Interface       Date:  2015-05-06       Impact factor: 4.118

2.  Moment-flux models for bacterial chemotaxis in large signal gradients.

Authors:  Chuan Xue; Xige Yang
Journal:  J Math Biol       Date:  2016-02-27       Impact factor: 2.259

3.  Macroscopic equations for bacterial chemotaxis: integration of detailed biochemistry of cell signaling.

Authors:  Chuan Xue
Journal:  J Math Biol       Date:  2013-12-24       Impact factor: 2.259

4.  Excitation and adaptation in bacteria-a model signal transduction system that controls taxis and spatial pattern formation.

Authors:  Hans G Othmer; Xiangrong Xin; Chuan Xue
Journal:  Int J Mol Sci       Date:  2013-04-26       Impact factor: 5.923

5.  Travelling wave analysis in chemotaxis: case of starvation.

Authors:  P M Tchepmo Djomegni
Journal:  Springerplus       Date:  2016-06-29

6.  Feedback between motion and sensation provides nonlinear boost in run-and-tumble navigation.

Authors:  Junjiajia Long; Steven W Zucker; Thierry Emonet
Journal:  PLoS Comput Biol       Date:  2017-03-06       Impact factor: 4.475

Review 7.  Spatially extended hybrid methods: a review.

Authors:  Cameron A Smith; Christian A Yates
Journal:  J R Soc Interface       Date:  2018-02       Impact factor: 4.118

8.  On the efficiency of chemotactic pursuit - Comparing blind search with temporal and spatial gradient sensing.

Authors:  Claus Metzner
Journal:  Sci Rep       Date:  2019-10-01       Impact factor: 4.379

9.  The role of intracellular signaling in the stripe formation in engineered Escherichia coli populations.

Authors:  Xiaoru Xue; Chuan Xue; Min Tang
Journal:  PLoS Comput Biol       Date:  2018-06-04       Impact factor: 4.475

  9 in total

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