| Literature DB >> 24342878 |
Barak Rotblat1, Thomas G P Grunewald, Gabriel Leprivier, Gerry Melino, Richard A Knight.
Abstract
Cells mount a transcriptional anti-oxidative stress (AOS) response program to scavenge reactive oxygen species (ROS) that arise from chemical, physical, and metabolic challenges. This protective program has been shown to reduce carcinogenesis triggered by chemical and physical insults. However, it is also hijacked by established cancers to thrive and proliferate within the hostile tumor microenvironment and to gain resistance against chemo- and radiotherapies. Therefore, targeting the AOS response proteins that are exploited by cancer cells is an attractive therapeutic strategy. In order to identify the AOS genes that are suspected to support cancer progression and resistance, we analyzed the expression patterns of 285 genes annotated for being involved in oxidative stress in 994 tumors and 353 normal tissues. Thereby we identified a signature of 116 genes that are highly overexpressed in multiple carcinomas while being only minimally expressed in normal tissues. To establish which of these genes are more likely to functionally drive cancer resistance and progression, we further identified those whose overexpression correlates with negative patient outcome in breast and lung carcinoma. Gene-set enrichment, GO, network, and pathway analyses revealed that members of the thioredoxin and glutathione pathways are prominent components of this oncogenic signature and that activation of these pathways is common feature of many cancer entities. Interestingly, a large fraction of these AOS genes are downstream targets of the transcription factors NRF2, NF-kappaB and FOXM1, and relay on NADPH for their enzymatic activities highlighting promising drug targets. We discuss these findings and propose therapeutic strategies that may be applied to overcome cancer resistance.Entities:
Mesh:
Year: 2013 PMID: 24342878 PMCID: PMC3926850 DOI: 10.18632/oncotarget.1658
Source DB: PubMed Journal: Oncotarget ISSN: 1949-2553
Figure 1Gene expression patterns of 285 oxidative stress genes in 353 normal tissues and various carcinomas (total n=994, 10 different entities)
Gene expression data were retrieved from the Gene Expression Omnibus (GEO; http://www.ncbi.nlm.nih.gov/gds) of published microarray studies (all Affymetrix HG-U133plus2.0). Normal tissue n=353 (GSE3526) [133]. Carcinomas: bladder n=102 (GSE31684, GSE7476), breast n=107 (GSE36774), colorectal n=177 (GSE17536), gastric cancer (ga) n=43 (GSE22377), liver (hepatocellular carcinoma) n=91 (GSE9843), kidney (ki) n=52 (GSE11151), melanoma (melan) n=101 (GSE10282, GSE15605), lung (non-small-cell lung cancer, NSCLC) n=196 (GSE37745), pancreas (pan) n=52 (GSE17891, GSE32676), ovary (ov) n=73 (GSE14001, GSE18520). All microarray data were normalized simultaneously by RMA [134] using custom brainarray (v15.0) ENTREZG CDF-files as previously described [132, 135, 136]. Hierarchical clustering of genes (1-Pearson correlation) and k-means clustering (2 signatures, 10,000 iterations) of microarray samples were performed with GENE-E software (http://www.broadinstitute.org/cancer/software/GENE-E/index.html). Gene expression data were log2 transformed for depiction in a heat-map.
Figure 2Enrichment of genes coding for enzymes involved in glutathione synthesis in the cancer AOS genes signature
A. The depicted gene network was identified by R_SPIDER as statistically enriched in the list of genes that are highly expressed in cancers (group 6) (Table S1). Genes are represented by red boxes, known interactions between the corresponding proteins are displayed as blue lines and metabolites by green circles. B. Typical Kaplan-Meier plots are shown.
List of AOS response genes highly expressed in cancers which correlate with outcome in breast or lung cancer
The cancer AOS response signature was analyzed using bioprofiling.de GENE_SRV to identify cancers in which these genes have significant predictive power. Only genes that were found to correlate with survival are shown. Gene name, ENTREZ ID, microarray probeset ID and p value are provided. Kaplan-Meier plots for all the indicated genes are displayed in Figure S1-S3.
| Breast cancer | ENTREZ ID | ||
|---|---|---|---|
| Gene | (probe ID) | P-value | |
| Bad prognosis | BTG3 | 10950 (360504) | 0.00357 |
| CASP3 | 836 (540397) | 0.0000453 | |
| CDC2 | 983 (5360092) | 0.0000105 | |
| ECT2 | 1894 (5420064) | 0.00012 | |
| EGLN1 | 54583 (6130168) | 0.00586 | |
| FOXM1 | 2305 (5390044) | 2.51E-08 | |
| G6PD | 2539 (5700072) | 0.00748 | |
| GAPDH | 2597 (1940184) | 0.00321 | |
| HMOX1 | 3162 (6180100) | 0.000294 | |
| LONP1 | 9361 (870538) | 0.0031 | |
| NUDT1 | 4521 (6180369) | 0.0016 | |
| PRDX4 | 10549 (940131) | 0.00276 | |
| PSMB5 | 5693 (3610041) | 0.00337 | |
| SELS | 55829 (7100450) | 0.00844 | |
| SERPINE1 | 5054 (6840139) | 0.00167 | |
| SRXN1 | 140809 (3190176) | 0.00336 | |
| TXNRD1 | 7296 (6220603) | 0.00000169 | |
| Good prognosis | PON2 | 5445 (7040022) | 0.00457 |
| SIRT1 | 23411 (6940021) | 0.00918 | |
| Lung cancer | NCBI ID | ||
| NCBI ID | (probe ID) | P-value | |
| Bad prognosis | COL1A1 | 1277 (926) | 0.000675 |
| GAPDH | 2597 (1738) | 0.00185 | |
| GCLC | 2729 (14771) | 0.00354 | |
| GSS | 2937 (267) | 0.00934 | |
| NQO1 | 1728 (20812) | 0.0045 | |
| RNF7 | 9616 (12099) | 0.00439 | |
| STK24 | 8428 (10957) | 0.00195 | |
| TXN | 7295 (10753) | 0.00789 | |
| TXNRD1 | 7296 (8394) | 0.00284 | |
| Good prognosis | NFKB1 | 4790 (3750) | 0.000849 |
NRF2 targets
Figure 3Glutathione and TXN systems
Genes that are highly expressed in tumors versus normal tissues are highlighted in gray and those associated with bad prognosis in lung or breast cancer are highlighted in yellow. The redox state of proteins and metabolites is depicted in color (red=reduced and blue=oxidized). Metabolites are boxed and inhibitors are circled. This scheme is adapted from [137].