| Literature DB >> 24339823 |
Abstract
Raman spectroscopy plays a major role in robust detection of biomolecules and mineral signatures in halophile research. An overview of Raman spectroscopic investigations in halophile research of the last decade is given here to show advantages of the approach, progress made as well as limits of the technique. Raman spectroscopy is an excellent tool to monitor and identify microbial pigments and other biomolecules in extant and extinct halophile biomass. Studies of bottom gypsum crusts from salterns, native evaporitic sediments, halite inclusions, and endoliths as well as cultures of halophilic microorganisms permitted to understand the content, distribution, and behavior of important molecular species. The first papers describing Raman spectroscopic detection of microbiological and geochemical key markers using portable instruments are highlighted as well.Entities:
Keywords: Raman spectroscopy; carotenoids; compatible solutes; gypsum crusts; halophilic; salterns
Year: 2013 PMID: 24339823 PMCID: PMC3857566 DOI: 10.3389/fmicb.2013.00380
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 5.640
Main Raman bands and intensities for pigments and compatible solutes.
| Bacterioruberin | 1505 s, 1152 s, 1000 s | Marshall et al., | |
| 1507 s, 1152 s, 1002 s | Fendrihan et al., | ||
| 1506 s, 1152 s, 1001 s | Jehlička et al., | ||
| 1506 s, 1151 s, 1000 s | Jehlička et al., | ||
| Salinixanthin | 1512 s, 1155 s, 1003 s | Jehlička et al., | |
| Bacteriorhodopsin | Standard | 1526 s, 1199 m, 1168 m, 1150 m, 1007 s | Marshall et al., |
| Chlorophyll | Native crusts Atacama cyanobacteria | 1445 m, 1308 m, 745 m, 508 m | Vítek et al., |
| Scytonemin | 1595 m, 1554 m, 1173 m | Edwards et al., | |
| Native crusts Atacama | 1596 s, 1558 s, 1321 s, 1172 m | Vítek et al., | |
| Phycobiliproteins | Native crusts Atacama | 1631 w, 1583 w, 1370 w, 1283 w, 1235 w, 874 w, 815 w, 665 w | Vítek et al., |
| Glycerol | Standard | 1465 m, 1315 m, 1257 m, 1110 s, 1055 s, 923 m, 850 s, 820 s, 675 m, 485 m, 416 m, 392 s | De Gelder et al., |
| Trehalose | Standard | 1455 m, 1411 m, 1386 m, 1371 m, 1358 vs, 1330 m, 1149 vs, 1120 vs, 1102 s, 1080 m, 1061 m, 1018 m, 912 vs838 vs, 804 m, 697 m, 671 m, 604 m, 540 s, 523 vs, 450 s, 430 m, 407 vs, 369 vs | De Gelder et al., |
| Glutamate | Standard | 1434 m, 1421 s, 1401 vs, 1353 m, 1341 s, 1317 s, 1293 m, 1282 m, 1142 m, 1095 m, 942 vs, 925 m, 876 s, 857 vs, 775 m, 529 m, 499 m | De Gelder et al., |
| L-proline | Standard | 1454 s, 1389 m, 1378 m, 1286 m, 1267 m, 1240 m, 1083 m, 1045 m, 1035 m, 994 m, 947 m, 930 m, 916 vs, 899 vs, 877 m, 850 s, 842 vs, 834 vs, 642 m, 452 vs | De Gelder et al., |
| Ectoine | Standard | 3009 m, 2981 m, 2944 s, 2895 m, 1469 m, 1444 m, 1392 m, 1366 w, 1316 ms, 1280 ms, 1215 w, 1207 w, 1137 m, 1072 w, 1032 w, 999 w, 850 s, 804 vw, 692 vw, br, 657 vw, 599 w, 570 w, 498 w, 432 w | Jehlička et al., |
| 2985 m, sh, 2937 s, br, 2888 m, br, 1633 w, 1465 vw, sh, 1439 w, sh, 1394 s, 1319 vw, sh, 1275 m, 1212 w, sh, 1136 w, 1030 vw, 1000 vw, 903 vw, 845 m, 803 vw, 686 vw, 655 vw, 596 w, 571 w, 435 vw | Jehlička et al., | ||
| Hydroxyectoine | Standard | 3017 m, 2935 s, 861 w, 1640 w, 1613 m, 1438 m, 1349 m, 1318 ms, 1263 s, 1213 m, 1151 m, 1092 ms, 1014 s, 970 w, 901 m, 890 m, 828 ms, 751 s, 631 m, 558 m, 395 m, 381 s, 359 m, 311 m | Jehlička et al., |
| Glycine betaine | Standard | 3375 m, 3290 m, 3053 m, 3034 m, 2982 m, 2969 s, 2867 w, 2937 m, 1650 w, 1462 s, 1427 m, 1412 w, 1343 m, 1132 w, 953 w, 939 w, 895 m, 783 s, 539 m, 363 m | Ilczyszyn and Ratajczak, |
| 3050 w, 3031 m, 2978 m, 2965 s, 2942 w, 2935 m, 2885 w, 2880 w, 2864 w, 2784 m, 1613 vw, 1458 m, 1423 w, 1410 w, 1340 w, 1129 w, 974 m, 952 m, 933 s, 896 w, 780 s, 725 w, 538 m, 457 w, 361 m | Jehlička et al., | ||
| 3059 w, 3032 m, 2966 m, 2936 m, 1645 vw, 1625 vw, 1457 m, 1410 vw, 1394 vw, 1342 vw, 1211 vw, 1127 vw, br, 976 w, 954 w, 933 s, 897 w, 779 s, 540 m, 456 w, 422 w, 366 w, 338 w | Jehlička et al., | ||
| Native gypsum crust (Eilat, Israel, red layer) | 3058 w, br, 3033 m, 2969 s, 2939 ms, 2880 m, 1458 m, 1452 m, 1421 w, sh, 1337 mW, 1212 w, 1131 vw, 978 w, 956 m, 934 s, 911 mW, 899 mW, 780 s, 730 vw, br, 684 vw, 542 mW, 458 w, 369 w, 339 vw | Oren et al., | |
| Glucosylglycerol | 2930 br, 2907 s, 1460 s, 1366 s, br, 1340 s, br, 1265 w, br, 1127 m, 1103 w, 955 w, 897 m, 842 s, 755 w, 707 w, 666 w, 544 m, 514 m, 435 w | Jehlička et al., | |
| Mannosylglycerate (K salt) | 3585 m, 3405 m, 2975 m, 2956 m, 2938 s, 2931 s, 2906 m, 1461 m, 1353 m, 1308 m, 1153 m, 1135 m, 1107 m, 1093 m, 1069 s, 1055 m, 1004 m, 958 m, 892 s, 825 s, 671 m, 589 m, 517 s, 429 w, 390 m, 350 m | Jehlička et al., | |
s, strong bands; m, medium bands; vw, very weak bands; mw, weak bands; w, weak bands; br, broad bands; sh, shoulder.