Literature DB >> 24336896

Gene expression scaled by distance to the genome replication site.

Bei-Wen Ying1, Saburo Tsuru, Shigeto Seno, Hideo Matsuda, Tetsuya Yomo.   

Abstract

A simple mode of gene expression scaled by the distance from the chromosomal location of the gene to the genome replication site oriC was determined. The common formula representing the effect of genomic position on expression capacity not only supports the multifork replication model but also provides a base correlation for theoretical simulation and synthetic constructs.

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Year:  2013        PMID: 24336896     DOI: 10.1039/c3mb70254e

Source DB:  PubMed          Journal:  Mol Biosyst        ISSN: 1742-2051


  11 in total

1.  Evolutionary Consequence of a Trade-Off between Growth and Maintenance along with Ribosomal Damages.

Authors:  Bei-Wen Ying; Tomoya Honda; Saburo Tsuru; Shigeto Seno; Hideo Matsuda; Yasuaki Kazuta; Tetsuya Yomo
Journal:  PLoS One       Date:  2015-08-20       Impact factor: 3.240

2.  A reduced genome decreases the host carrying capacity for foreign DNA.

Authors:  Yuya Akeno; Bei-Wen Ying; Saburo Tsuru; Tetsuya Yomo
Journal:  Microb Cell Fact       Date:  2014-04-01       Impact factor: 5.328

3.  Gene regulation by H-NS as a function of growth conditions depends on chromosomal position in Escherichia coli.

Authors:  Elisa Brambilla; Bianca Sclavi
Journal:  G3 (Bethesda)       Date:  2015-02-19       Impact factor: 3.154

4.  Bacterial transcriptome reorganization in thermal adaptive evolution.

Authors:  Bei-Wen Ying; Yuki Matsumoto; Kazuki Kitahara; Shingo Suzuki; Naoaki Ono; Chikara Furusawa; Toshihiko Kishimoto; Tetsuya Yomo
Journal:  BMC Genomics       Date:  2015-10-16       Impact factor: 3.969

5.  Density-Dependent Recycling Promotes the Long-Term Survival of Bacterial Populations during Periods of Starvation.

Authors:  Sotaro Takano; Bogna J Pawlowska; Ivana Gudelj; Tetsuya Yomo; Saburo Tsuru
Journal:  mBio       Date:  2017-02-07       Impact factor: 7.867

6.  An electroporation-free method based on Red recombineering for markerless deletion and genomic replacement in the Escherichia coli DH1 genome.

Authors:  Yanlong Wei; Pingping Deng; Ali Mohsin; Yan Yang; Huayan Zhou; Meijin Guo; Hongqing Fang
Journal:  PLoS One       Date:  2017-10-24       Impact factor: 3.240

7.  Correlation between the spatial distribution and colony size was common for monogenetic bacteria in laboratory conditions.

Authors:  Heng Xue; Masaomi Kurokawa; Bei-Wen Ying
Journal:  BMC Microbiol       Date:  2021-04-15       Impact factor: 3.605

8.  Primordial mimicry induces morphological change in Escherichia coli.

Authors:  Hui Lu; Honoka Aida; Masaomi Kurokawa; Feng Chen; Yang Xia; Jian Xu; Kai Li; Bei-Wen Ying; Tetsuya Yomo
Journal:  Commun Biol       Date:  2022-01-11

9.  Re-engineering cellular physiology by rewiring high-level global regulatory genes.

Authors:  Stephen Fitzgerald; Shane C Dillon; Tzu-Chiao Chao; Heather L Wiencko; Karsten Hokamp; Andrew D S Cameron; Charles J Dorman
Journal:  Sci Rep       Date:  2015-12-03       Impact factor: 4.379

10.  Correlated chromosomal periodicities according to the growth rate and gene expression.

Authors:  Liu Liu; Masaomi Kurokawa; Motoki Nagai; Shigeto Seno; Bei-Wen Ying
Journal:  Sci Rep       Date:  2020-09-23       Impact factor: 4.379

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