Literature DB >> 24335677

Rapid generation of amyloid from native proteins in vitro.

Stephanie M Dorta-Estremera1, Jingjing Li, Wei Cao.   

Abstract

Proteins carry out crucial tasks in organisms by exerting functions elicited from their specific three dimensional folds. Although the native structures of polypeptides fulfill many purposes, it is now recognized that most proteins can adopt an alternative assembly of beta-sheet rich amyloid. Insoluble amyloid fibrils are initially associated with multiple human ailments, but they are increasingly shown as functional players participating in various important cellular processes. In addition, amyloid deposited in patient tissues contains nonproteinaceous components, such as nucleic acids and glycosaminoglycans (GAGs). These cofactors can facilitate the formation of amyloid, resulting in the generation of different types of insoluble precipitates. By taking advantage of our understanding how proteins misfold via an intermediate stage of soluble amyloid precursor, we have devised a method to convert native proteins to amyloid fibrils in vitro. This approach allows one to prepare amyloid in large quantities, examine the properties of amyloid generated from specific proteins, and evaluate the structural changes accompanying the conversion.

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Year:  2013        PMID: 24335677      PMCID: PMC4044960          DOI: 10.3791/50869

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  29 in total

1.  Role of Escherichia coli curli operons in directing amyloid fiber formation.

Authors:  Matthew R Chapman; Lloyd S Robinson; Jerome S Pinkner; Robyn Roth; John Heuser; Marten Hammar; Staffan Normark; Scott J Hultgren
Journal:  Science       Date:  2002-02-01       Impact factor: 47.728

Review 2.  Protein degradation and protection against misfolded or damaged proteins.

Authors:  Alfred L Goldberg
Journal:  Nature       Date:  2003-12-18       Impact factor: 49.962

3.  A novel class of secreted hydrophobic proteins is involved in aerial hyphae formation in Streptomyces coelicolor by forming amyloid-like fibrils.

Authors:  Dennis Claessen; Rick Rink; Wouter de Jong; Jeroen Siebring; Peter de Vreugd; F G Hidde Boersma; Lubbert Dijkhuizen; Han A B Wosten
Journal:  Genes Dev       Date:  2003-06-27       Impact factor: 11.361

Review 4.  Structural classification of toxic amyloid oligomers.

Authors:  Charles G Glabe
Journal:  J Biol Chem       Date:  2008-08-22       Impact factor: 5.157

5.  The RIP1/RIP3 necrosome forms a functional amyloid signaling complex required for programmed necrosis.

Authors:  Jixi Li; Thomas McQuade; Ansgar B Siemer; Johanna Napetschnig; Kenta Moriwaki; Yu-Shan Hsiao; Ermelinda Damko; David Moquin; Thomas Walz; Ann McDermott; Francis Ka-Ming Chan; Hao Wu
Journal:  Cell       Date:  2012-07-20       Impact factor: 41.582

6.  Partially unfolded states of beta(2)-microglobulin and amyloid formation in vitro.

Authors:  V J McParland; N M Kad; A P Kalverda; A Brown; P Kirwin-Jones; M G Hunter; M Sunde; S E Radford
Journal:  Biochemistry       Date:  2000-08-01       Impact factor: 3.162

7.  A glimpse of a possible amyloidogenic intermediate of transthyretin.

Authors:  K Liu; H S Cho; H A Lashuel; J W Kelly; D E Wemmer
Journal:  Nat Struct Biol       Date:  2000-09

8.  The NALP3 inflammasome is involved in the innate immune response to amyloid-beta.

Authors:  Annett Halle; Veit Hornung; Gabor C Petzold; Cameron R Stewart; Brian G Monks; Thomas Reinheckel; Katherine A Fitzgerald; Eicke Latz; Kathryn J Moore; Douglas T Golenbock
Journal:  Nat Immunol       Date:  2008-07-11       Impact factor: 25.606

9.  Inherent toxicity of aggregates implies a common mechanism for protein misfolding diseases.

Authors:  Monica Bucciantini; Elisa Giannoni; Fabrizio Chiti; Fabiana Baroni; Lucia Formigli; Jesús Zurdo; Niccolò Taddei; Giampietro Ramponi; Christopher M Dobson; Massimo Stefani
Journal:  Nature       Date:  2002-04-04       Impact factor: 49.962

10.  Structural properties of an amyloid precursor of beta(2)-microglobulin.

Authors:  Victoria J McParland; Arnout P Kalverda; Steve W Homans; Sheena E Radford
Journal:  Nat Struct Biol       Date:  2002-05
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  4 in total

1.  A TLR9-dependent checkpoint governs B cell responses to DNA-containing antigens.

Authors:  Vishal J Sindhava; Michael A Oropallo; Krishna Moody; Martin Naradikian; Lauren E Higdon; Lin Zhou; Arpita Myles; Nathaniel Green; Kerstin Nündel; William Stohl; Amanda M Schmidt; Wei Cao; Stephanie Dorta-Estremera; Taku Kambayashi; Ann Marshak-Rothstein; Michael P Cancro
Journal:  J Clin Invest       Date:  2017-03-27       Impact factor: 14.808

2.  Human Pentraxins Bind to Misfolded Proteins and Inhibit Production of Type I Interferon Induced by Nucleic Acid-Containing Amyloid.

Authors:  Stephanie M Dorta-Estremera; Wei Cao
Journal:  J Clin Cell Immunol       Date:  2015-06-23

Review 3.  Congo Red and amyloids: history and relationship.

Authors:  Elmira I Yakupova; Liya G Bobyleva; Ivan M Vikhlyantsev; Alexander G Bobylev
Journal:  Biosci Rep       Date:  2019-01-15       Impact factor: 3.840

Review 4.  Structure and Aggregation Mechanisms in Amyloids.

Authors:  Zaida L Almeida; Rui M M Brito
Journal:  Molecules       Date:  2020-03-06       Impact factor: 4.411

  4 in total

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