Literature DB >> 24326248

An unusual mode of galactose recognition by a family 32 carbohydrate-binding module.

Julie M Grondin1, Seth Chitayat1, Elizabeth Ficko-Blean2, Scott Houliston3, Cheryl H Arrowsmith3, Alisdair B Boraston2, Steven P Smith4.   

Abstract

Carbohydrate-binding modules (CBMs) are ancillary modules commonly associated with carbohydrate-active enzymes (CAZymes) that function to mediate the adherence of the parent enzyme to its carbohydrate substrates. CBM family 32 (CBM32) is one of the most diverse CBM families, whose members are commonly found in bacterial CAZymes that modify eukaryotic glycans. One such example is the putative μ-toxin, CpGH84A, of the family 84 glycoside hydrolases, which comprises an N-terminal putative β-N-acetylglucosaminidase catalytic module and four tandem CBM32s. Here, we report a unique mode of galactose recognition by the first CBM32, CBM32-1 from CpGH84A. Solution NMR-based analyses of CpGH84A CBM32-1 indicate a divergent subset of residues, located in ordered loops at the apex of the CBM, conferring specificity for the galacto-configured sugars galactose, GalNAc, and LacNAc that differs from those of the canonical galactose-binding CBM32s. This study showcases the impressive variability in ligand binding by this CBM family and offers insight into the growing role of these modules in the interaction of CAZymes with eukaryotic glycans.
Copyright © 2013 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  2D; CAZyme; CBM; Clostridium perfringens; HSQC; NMR spectroscopy; NOE; NOE spectroscopy; NOESY; STD; carbohydrate-active enzyme; carbohydrate-binding module; family 84 glycoside hydrolase; galacto-configured sugar; heteronuclear single quantum coherence; nuclear Overhauser enhancement; saturation transfer difference; two-dimensional

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Year:  2013        PMID: 24326248     DOI: 10.1016/j.jmb.2013.11.029

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  6 in total

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5.  Diverse modes of galacto-specific carbohydrate recognition by a family 31 glycoside hydrolase from Clostridium perfringens.

Authors:  Julie M Grondin; Da Duan; Alyssa C Kirlin; Kento T Abe; Seth Chitayat; Holly L Spencer; Craig Spencer; Alisha Campigotto; Scott Houliston; Cheryl H Arrowsmith; John S Allingham; Alisdair B Boraston; Steven P Smith
Journal:  PLoS One       Date:  2017-02-03       Impact factor: 3.240

6.  Characterization of Full-Length and Truncated Recombinant κ-Carrageenase Expressed in Pichia pastoris.

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  6 in total

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