Literature DB >> 24319631

Systems and Network Pharmacology Approaches to Cancer Stem Cells Research and Therapy.

Irfana Muqbil1, Ginny W Bao, Rkya El-Kharraj, Minjel Shah, Ramzi M Mohammad, Fazlul H Sarkar, Asfar S Azmi.   

Abstract

The cancer stem cell (CSC) hypothesis is increasingly being accepted as a model to explain for the functional heterogeneity that is commonly observed in solid tumors. According to this hypothesis, there exists a hierarchical organization of cells within the tumor, in which a differential subpopulation of stem-like cells is responsible for sustaining and recurrence of tumor growth. CSCs have been shown to exist in a variety of solid tumors especially those with known resistant phenotypes such as breast, prostate and pancreatic adenocarcinoma (PDAC). In all these models, the commonality of deregulation of three crucial pathways; Wnt, notch and hedgehog that maintain CSC self-renewal capacity is emerging. Collectively these major pathways and have been linked to the observed resistance of CSC to chemotherapy and radiotherapy. The existing lack of knowledge and our incomplete understanding of the molecular signatures associated with CSCs highlight the need for better approaches in both isolation and identification of unique pathways associated with these cells. In this direction, computational biology, especially systems and network approaches, have proven to be of great utility in unraveling pathway complexities such as those associated with CSCs. With highlights on the most up-to-date molecular, network, cellular, clinical, and therapeutic cancer research findings, this article tends to provide a wealth of insights on systems and network biology approaches to CSC marker identification, the mechanism through which they evade treatment as well as therapeutic approaches that will help in conquering these elusive cells in incurable and refractory malignancies.

Entities:  

Keywords:  Bioinformatics; Computational biology; Network medicine; Network pharmacology; Systems biology

Year:  2012        PMID: 24319631      PMCID: PMC3852409          DOI: 10.4172/2157-7633.S7-005

Source DB:  PubMed          Journal:  J Stem Cell Res Ther


  52 in total

1.  Current trends in the chemoprevention of cancer.

Authors:  Fazlul H Sarkar
Journal:  Pharm Res       Date:  2010-04-17       Impact factor: 4.200

Review 2.  Lesson learned from nature for the development of novel anti-cancer agents: implication of isoflavone, curcumin, and their synthetic analogs.

Authors:  Fazlul H Sarkar; Yiwei Li; Zhiwei Wang; Subhash Padhye
Journal:  Curr Pharm Des       Date:  2010-06       Impact factor: 3.116

3.  Inhibition of angiogenesis and invasion by 3,3'-diindolylmethane is mediated by the nuclear factor-kappaB downstream target genes MMP-9 and uPA that regulated bioavailability of vascular endothelial growth factor in prostate cancer.

Authors:  Dejuan Kong; Yiwei Li; Zhiwei Wang; Sanjeev Banerjee; Fazlul H Sarkar
Journal:  Cancer Res       Date:  2007-04-01       Impact factor: 12.701

4.  RETRACTED: Increased Ras GTPase activity is regulated by miRNAs that can be attenuated by CDF treatment in pancreatic cancer cells.

Authors:  Shadan Ali; Aamir Ahmad; Amro Aboukameel; Bin Bao; Subhash Padhye; Philip A Philip; Fazlul H Sarkar
Journal:  Cancer Lett       Date:  2012-01-17       Impact factor: 8.679

5.  Inclusion complex of novel curcumin analogue CDF and β-cyclodextrin (1:2) and its enhanced in vivo anticancer activity against pancreatic cancer.

Authors:  Prasad R Dandawate; Alok Vyas; Aamir Ahmad; Sanjeev Banerjee; Jyoti Deshpande; K Venkateswara Swamy; Abeda Jamadar; Anne Catherine Dumhe-Klaire; Subhash Padhye; Fazlul H Sarkar
Journal:  Pharm Res       Date:  2012-02-10       Impact factor: 4.200

Review 6.  Systems biology discoveries using non-human primate pluripotent stem and germ cells: novel gene and genomic imprinting interactions as well as unique expression patterns.

Authors:  Ahmi Ben-Yehudah; Charles A Easley; Brian P Hermann; Carlos Castro; Calvin Simerly; Kyle E Orwig; Shoukhrat Mitalipov; Gerald Schatten
Journal:  Stem Cell Res Ther       Date:  2010-08-05       Impact factor: 6.832

7.  Fluorocurcumins as cyclooxygenase-2 inhibitor: molecular docking, pharmacokinetics and tissue distribution in mice.

Authors:  Subhash Padhye; Sanjeev Banerjee; Deepak Chavan; Shubhangini Pandye; K Venkateswara Swamy; Shadan Ali; Jing Li; Q Ping Dou; Fazlul H Sarkar
Journal:  Pharm Res       Date:  2009-08-28       Impact factor: 4.200

8.  Regulation of Akt/FOXO3a/GSK-3beta/AR signaling network by isoflavone in prostate cancer cells.

Authors:  Yiwei Li; Zhiwei Wang; Dejuan Kong; Ran Li; Sanila H Sarkar; Fazlul H Sarkar
Journal:  J Biol Chem       Date:  2008-08-07       Impact factor: 5.157

9.  Computational integration of homolog and pathway gene module expression reveals general stemness signatures.

Authors:  Martina Koeva; E Camilla Forsberg; Joshua M Stuart
Journal:  PLoS One       Date:  2011-04-29       Impact factor: 3.240

10.  Dynamic modeling of genes controlling cancer stem cell proliferation.

Authors:  Zhong Wang; Jingyuan Liu; Jianxin Wang; Yaqun Wang; Ningtao Wang; Yao Li; Runze Li; Rongling Wu
Journal:  Front Genet       Date:  2012-05-22       Impact factor: 4.599

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  5 in total

1.  Primary cultures of human colon cancer as a model to study cancer stem cells.

Authors:  Sergey Koshkin; Anna Danilova; Grigory Raskin; Nikolai Petrov; Olga Bajenova; Stephen J O'Brien; Alexey Tomilin; Elena Tolkunova
Journal:  Tumour Biol       Date:  2016-07-23

Review 2.  Designing a broad-spectrum integrative approach for cancer prevention and treatment.

Authors:  Keith I Block; Charlotte Gyllenhaal; Leroy Lowe; Amedeo Amedei; A R M Ruhul Amin; Amr Amin; Katia Aquilano; Jack Arbiser; Alexandra Arreola; Alla Arzumanyan; S Salman Ashraf; Asfar S Azmi; Fabian Benencia; Dipita Bhakta; Alan Bilsland; Anupam Bishayee; Stacy W Blain; Penny B Block; Chandra S Boosani; Thomas E Carey; Amancio Carnero; Marianeve Carotenuto; Stephanie C Casey; Mrinmay Chakrabarti; Rupesh Chaturvedi; Georgia Zhuo Chen; Helen Chen; Sophie Chen; Yi Charlie Chen; Beom K Choi; Maria Rosa Ciriolo; Helen M Coley; Andrew R Collins; Marisa Connell; Sarah Crawford; Colleen S Curran; Charlotta Dabrosin; Giovanna Damia; Santanu Dasgupta; Ralph J DeBerardinis; William K Decker; Punita Dhawan; Anna Mae E Diehl; Jin-Tang Dong; Q Ping Dou; Janice E Drew; Eyad Elkord; Bassel El-Rayes; Mark A Feitelson; Dean W Felsher; Lynnette R Ferguson; Carmela Fimognari; Gary L Firestone; Christian Frezza; Hiromasa Fujii; Mark M Fuster; Daniele Generali; Alexandros G Georgakilas; Frank Gieseler; Michael Gilbertson; Michelle F Green; Brendan Grue; Gunjan Guha; Dorota Halicka; William G Helferich; Petr Heneberg; Patricia Hentosh; Matthew D Hirschey; Lorne J Hofseth; Randall F Holcombe; Kanya Honoki; Hsue-Yin Hsu; Gloria S Huang; Lasse D Jensen; Wen G Jiang; Lee W Jones; Phillip A Karpowicz; W Nicol Keith; Sid P Kerkar; Gazala N Khan; Mahin Khatami; Young H Ko; Omer Kucuk; Rob J Kulathinal; Nagi B Kumar; Byoung S Kwon; Anne Le; Michael A Lea; Ho-Young Lee; Terry Lichtor; Liang-Tzung Lin; Jason W Locasale; Bal L Lokeshwar; Valter D Longo; Costas A Lyssiotis; Karen L MacKenzie; Meenakshi Malhotra; Maria Marino; Maria L Martinez-Chantar; Ander Matheu; Christopher Maxwell; Eoin McDonnell; Alan K Meeker; Mahya Mehrmohamadi; Kapil Mehta; Gregory A Michelotti; Ramzi M Mohammad; Sulma I Mohammed; D James Morre; Vinayak Muralidhar; Irfana Muqbil; Michael P Murphy; Ganji Purnachandra Nagaraju; Rita Nahta; Elena Niccolai; Somaira Nowsheen; Carolina Panis; Francesco Pantano; Virginia R Parslow; Graham Pawelec; Peter L Pedersen; Brad Poore; Deepak Poudyal; Satya Prakash; Mark Prince; Lizzia Raffaghello; Jeffrey C Rathmell; W Kimryn Rathmell; Swapan K Ray; Jörg Reichrath; Sarallah Rezazadeh; Domenico Ribatti; Luigi Ricciardiello; R Brooks Robey; Francis Rodier; H P Vasantha Rupasinghe; Gian Luigi Russo; Elizabeth P Ryan; Abbas K Samadi; Isidro Sanchez-Garcia; Andrew J Sanders; Daniele Santini; Malancha Sarkar; Tetsuro Sasada; Neeraj K Saxena; Rodney E Shackelford; H M C Shantha Kumara; Dipali Sharma; Dong M Shin; David Sidransky; Markus David Siegelin; Emanuela Signori; Neetu Singh; Sharanya Sivanand; Daniel Sliva; Carl Smythe; Carmela Spagnuolo; Diana M Stafforini; John Stagg; Pochi R Subbarayan; Tabetha Sundin; Wamidh H Talib; Sarah K Thompson; Phuoc T Tran; Hendrik Ungefroren; Matthew G Vander Heiden; Vasundara Venkateswaran; Dass S Vinay; Panagiotis J Vlachostergios; Zongwei Wang; Kathryn E Wellen; Richard L Whelan; Eddy S Yang; Huanjie Yang; Xujuan Yang; Paul Yaswen; Clement Yedjou; Xin Yin; Jiyue Zhu; Massimo Zollo
Journal:  Semin Cancer Biol       Date:  2015-12       Impact factor: 15.707

Review 3.  How Can Synergism of Traditional Medicines Benefit from Network Pharmacology?

Authors:  Haidan Yuan; Qianqian Ma; Heying Cui; Guancheng Liu; Xiaoyan Zhao; Wei Li; Guangchun Piao
Journal:  Molecules       Date:  2017-07-07       Impact factor: 4.411

Review 4.  Flaxseed Lignans as Important Dietary Polyphenols for Cancer Prevention and Treatment: Chemistry, Pharmacokinetics, and Molecular Targets.

Authors:  S Franklyn De Silva; Jane Alcorn
Journal:  Pharmaceuticals (Basel)       Date:  2019-05-05

Review 5.  Novel Holistic Approaches for Overcoming Therapy Resistance in Pancreatic and Colon Cancers.

Authors:  Fazlul H Sarkar
Journal:  Med Princ Pract       Date:  2015-07-24       Impact factor: 1.927

  5 in total

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