Literature DB >> 24318648

Calibration of forcefields for molecular simulation: sequential design of computer experiments for building cost-efficient kriging metamodels.

Fabien Cailliez1, Arnaud Bourasseau, Pascal Pernot.   

Abstract

We present a global strategy for molecular simulation forcefield optimization, using recent advances in Efficient Global Optimization algorithms. During the course of the optimization process, probabilistic kriging metamodels are used, that predict molecular simulation results for a given set of forcefield parameter values. This enables a thorough investigation of parameter space, and a global search for the minimum of a score function by properly integrating relevant uncertainty sources. Additional information about the forcefield parameters are obtained that are inaccessible with standard optimization strategies. In particular, uncertainty on the optimal forcefield parameters can be estimated, and transferred to simulation predictions. This global optimization strategy is benchmarked on the TIP4P water model.
Copyright © 2013 Wiley Periodicals, Inc.

Entities:  

Keywords:  efficient global optimization; forcefield calibration; kriging; molecular simulation; uncertainty quantification

Year:  2013        PMID: 24318648     DOI: 10.1002/jcc.23475

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  4 in total

1.  Generalized Nonlinear Least Squares Method for the Calibration of Complex Computer Code Using a Gaussian Process Surrogate.

Authors:  Youngsaeng Lee; Jeong-Soo Park
Journal:  Entropy (Basel)       Date:  2020-09-04       Impact factor: 2.524

2.  Expectation-Maximization Algorithm for the Calibration of Complex Simulator Using a Gaussian Process Emulator.

Authors:  Yun Am Seo; Jeong-Soo Park
Journal:  Entropy (Basel)       Date:  2020-12-31       Impact factor: 2.524

3.  Atomistic Descriptors for Machine Learning Models of Solubility Parameters for Small Molecules and Polymers.

Authors:  Mingzhe Chi; Rihab Gargouri; Tim Schrader; Kamel Damak; Ramzi Maâlej; Marek Sierka
Journal:  Polymers (Basel)       Date:  2021-12-22       Impact factor: 4.329

4.  A Polarization-Consistent Model for Alcohols to Predict Solvation Free Energies.

Authors:  Maria Cecilia Barrera; Miguel Jorge
Journal:  J Chem Inf Model       Date:  2020-02-03       Impact factor: 4.956

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.