Literature DB >> 24313772

Personalized management of chronic obstructive pulmonary disease via transcriptomic profiling of the airway and lung.

Katrina Steiling1, Marc E Lenburg, Avrum Spira.   

Abstract

Chronic obstructive pulmonary disease (COPD) is a clinically heterogeneous disease composed of variable degrees of airflow obstruction, emphysematous destruction, and small airway wall thickening. The natural history of this disease, although generally characterized by continued decline in lung function, is also highly variable. Novel transcriptomic approaches to study the airway and lung tissue in COPD hold the potential to improve our understanding of the molecular mechanisms underlying this heterogeneity and identify molecular subtypes of disease that have similar clinical manifestations. This new understanding can be leveraged to develop targeted COPD therapies and ultimately personalize treatment of COPD based on each patient's specific molecular subphenotype.

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Year:  2013        PMID: 24313772      PMCID: PMC3960986          DOI: 10.1513/AnnalsATS.201306-190AW

Source DB:  PubMed          Journal:  Ann Am Thorac Soc        ISSN: 2325-6621


  48 in total

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Authors:  Prescott G Woodruff; Barmak Modrek; David F Choy; Guiquan Jia; Alexander R Abbas; Almut Ellwanger; Laura L Koth; Joseph R Arron; John V Fahy
Journal:  Am J Respir Crit Care Med       Date:  2009-05-29       Impact factor: 21.405

2.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

3.  Molecular profiling of diffuse large B-cell lymphoma identifies robust subtypes including one characterized by host inflammatory response.

Authors:  Stefano Monti; Kerry J Savage; Jeffery L Kutok; Friedrich Feuerhake; Paul Kurtin; Martin Mihm; Bingyan Wu; Laura Pasqualucci; Donna Neuberg; Ricardo C T Aguiar; Paola Dal Cin; Christine Ladd; Geraldine S Pinkus; Gilles Salles; Nancy Lee Harris; Riccardo Dalla-Favera; Thomas M Habermann; Jon C Aster; Todd R Golub; Margaret A Shipp
Journal:  Blood       Date:  2004-11-18       Impact factor: 22.113

4.  Comprehensive gene expression profiles reveal pathways related to the pathogenesis of chronic obstructive pulmonary disease.

Authors:  Wen Ning; Chao-Jun Li; Naftali Kaminski; Carol A Feghali-Bostwick; Sean M Alber; Yuanpu P Di; Sherrie L Otterbein; Ruiping Song; Shizu Hayashi; Zhihong Zhou; David J Pinsky; Simon C Watkins; Joseph M Pilewski; Frank C Sciurba; David G Peters; James C Hogg; Augustine M K Choi
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-05       Impact factor: 11.205

5.  Down-regulation of the notch pathway in human airway epithelium in association with smoking and chronic obstructive pulmonary disease.

Authors:  Ann E Tilley; Ben-Gary Harvey; Adriana Heguy; Neil R Hackett; Rui Wang; Timothy P O'Connor; Ronald G Crystal
Journal:  Am J Respir Crit Care Med       Date:  2008-12-23       Impact factor: 21.405

6.  A prediction model for lung cancer diagnosis that integrates genomic and clinical features.

Authors:  Jennifer Beane; Paola Sebastiani; Theodore H Whitfield; Katrina Steiling; Yves-Martine Dumas; Marc E Lenburg; Avrum Spira
Journal:  Cancer Prev Res (Phila)       Date:  2008-03-31

7.  A gene expression signature of emphysema-related lung destruction and its reversal by the tripeptide GHK.

Authors:  Joshua D Campbell; John E McDonough; Julie E Zeskind; Tillie L Hackett; Dmitri V Pechkovsky; Corry-Anke Brandsma; Masaru Suzuki; John V Gosselink; Gang Liu; Yuriy O Alekseyev; Ji Xiao; Xiaohui Zhang; Shizu Hayashi; Joel D Cooper; Wim Timens; Dirkje S Postma; Darryl A Knight; Marc E Lenburg; James C Hogg; Avrum Spira
Journal:  Genome Med       Date:  2012-08-31       Impact factor: 11.117

8.  Meta-analysis of inter-species liver co-expression networks elucidates traits associated with common human diseases.

Authors:  Kai Wang; Manikandan Narayanan; Hua Zhong; Martin Tompa; Eric E Schadt; Jun Zhu
Journal:  PLoS Comput Biol       Date:  2009-12-18       Impact factor: 4.475

9.  Smoking-induced gene expression changes in the bronchial airway are reflected in nasal and buccal epithelium.

Authors:  Sriram Sridhar; Frank Schembri; Julie Zeskind; Vishal Shah; Adam M Gustafson; Katrina Steiling; Gang Liu; Yves-Martine Dumas; Xiaohui Zhang; Jerome S Brody; Marc E Lenburg; Avrum Spira
Journal:  BMC Genomics       Date:  2008-05-30       Impact factor: 3.969

Review 10.  Diagnostic and prognostic prediction using gene expression profiles in high-dimensional microarray data.

Authors:  R Simon
Journal:  Br J Cancer       Date:  2003-11-03       Impact factor: 7.640

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  2 in total

Review 1.  Tailoring of corticosteroids in COPD management.

Authors:  Daan A De Coster; Melvyn Jones
Journal:  Curr Respir Care Rep       Date:  2014-07-06

Review 2.  COPD: balancing oxidants and antioxidants.

Authors:  Bernard M Fischer; Judith A Voynow; Andrew J Ghio
Journal:  Int J Chron Obstruct Pulmon Dis       Date:  2015-02-02
  2 in total

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