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Literature DB >> 24310350

Transfer RNA genes of Euglena gracilis chloroplast DNA : A review.

R B Hallick¹, M J Hollingsworth, J A Nickoloff.

Abstract

Transfer RNA genes have been mapped to at least nine different loci on the physical map of the Euglena gracilis chloroplast genome. One of these loci in the ribosomal RNA operons is present three times per genome. The DNA sequences of six of the nine different loci, containing 21 different tRNA genes, have been determined. Genes corresponding to the amino acids Ala, Arg, Asn, Cys, Gln, Gly (2), Glu, His, Ile, Leu (2), Met (2), Phe, Ser, Thr, Trp, Tyr, Val, and one unassigned species have been identified. All genes except one are found in clusters of 2-6 genes. None of the known genes contains introns, nor codes for the 3'-CCA terminus. In addition to these genes, two pseudo tRNA genes are present in the rDNA leader region.

Entities: Chemical Species

Year: 1984 PMID： 24310350 DOI： 10.1007/BF00016064

Source DB: PubMed Journal: Plant Mol Biol ISSN： 0167-4412 Impact factor: 4.076

21 in total

1. STRUCTURE OF A RIBONUCLEIC ACID.

Authors: R W HOLLEY; J APGAR; G A EVERETT; J T MADISON; M MARQUISEE; S H MERRILL; J R PENSWICK; A ZAMIR
Journal: Science Date: 1965-03-19 Impact factor: 47.728

2. Detection of specific sequences among DNA fragments separated by gel electrophoresis.

Authors: E M Southern
Journal: J Mol Biol Date: 1975-11-05 Impact factor: 5.469

3. Analysis of Euglena gracilis chloroplast DNA: mapping of a DNA sequence complementary to 16 s rRNA outside of the three rRNA gene sets.

Authors: B Jenni; E Stutz
Journal: FEBS Lett Date: 1979-06-01 Impact factor: 4.124

4. The first nucleotide sequence of an organelle transfer RNA: chloroplastic tRNAphe.

Authors: S H Chang; C K Brum; M Siberklang; U L RajBhandary; L I Hecker; W E Barnett
Journal: Cell Date: 1976-12 Impact factor: 41.582

5. Euglena gracilis chloroplast transfer RNA transcription units. I. Physical map of the transfer RNA gene loci.

Authors: E M Orozco; R B Hallick
Journal: J Biol Chem Date: 1982-03-25 Impact factor: 5.157

6. Synthetic deoxyoligonucleotides as general probes for chloroplast transfer RNA genes.

Authors: J A Nickoloff; R B Hallick
Journal: Nucleic Acids Res Date: 1982-12-20 Impact factor: 16.971

7. Sequencing of 16S--23S spacer in a ribosomal RNA operon of Euglena gracilis chloroplast DNA reveals two tRNA genes.

Authors: L Graf; H Kössel; E Stutz
Journal: Nature Date: 1980-08-28 Impact factor: 49.962

8. Transfer RNA genes associated with the 16S and 23S rRNA genes of Euglena chloroplast DNA.

Authors: M Keller; G Burkard; H J Bohnert; M Mubumbila; K Gordon; A Steinmetz; D Heiser; E J Crouse; J H Weil
Journal: Biochem Biophys Res Commun Date: 1980-07-16 Impact factor: 3.575

9. Location of a phenylalanine tRNA gene on the physical map of the Euglena gracilis chloroplast genome.

Authors: M R El-Gewely; R B Helling; W Farmerie; W E Barnett
Journal: Gene Date: 1982-03 Impact factor: 3.688

10. Hybridization of bean, spinach, maize and Euglena chloroplast transfer RNAs with homologous and heterologous chloroplast DNAs. An approach to the study of homology between chloroplast tRNAs from various species.

Authors: M Mubumbila; G Burkard; M Keller; A Steinmetz; E Crouse; J H Weil
Journal: Biochim Biophys Acta Date: 1980-08-26

12 in total

Review 1. The chloroplast genome.

Authors: M Sugiura
Journal: Plant Mol Biol Date: 1992-05 Impact factor: 4.076

2. Localization and nucleotide sequences of the tRNA GCC (Gly) , tRNA GUC (Asp) and tRNA GCA (Cys) genes from wheat chloroplast.

Authors: F Quigley; J M Grienenberger; J H Weil
Journal: Plant Mol Biol Date: 1985-09 Impact factor: 4.076

6. Euglena gracilis chloroplast DNA: analysis of a 1.6 kb intron of the psb C gene containing an open reading frame of 458 codons.

Authors: P E Montandon; A Vasserot; E Stutz
Journal: Curr Genet Date: 1986 Impact factor: 3.886

Transfer RNA genes of Euglena gracilis chloroplast DNA : A review.

1. STRUCTURE OF A RIBONUCLEIC ACID.

2. Detection of specific sequences among DNA fragments separated by gel electrophoresis.

3. Analysis of Euglena gracilis chloroplast DNA: mapping of a DNA sequence complementary to 16 s rRNA outside of the three rRNA gene sets.

4. The first nucleotide sequence of an organelle transfer RNA: chloroplastic tRNAphe.

5. Euglena gracilis chloroplast transfer RNA transcription units. I. Physical map of the transfer RNA gene loci.

6. Synthetic deoxyoligonucleotides as general probes for chloroplast transfer RNA genes.

7. Sequencing of 16S--23S spacer in a ribosomal RNA operon of Euglena gracilis chloroplast DNA reveals two tRNA genes.

8. Transfer RNA genes associated with the 16S and 23S rRNA genes of Euglena chloroplast DNA.

9. Location of a phenylalanine tRNA gene on the physical map of the Euglena gracilis chloroplast genome.

10. Hybridization of bean, spinach, maize and Euglena chloroplast transfer RNAs with homologous and heterologous chloroplast DNAs. An approach to the study of homology between chloroplast tRNAs from various species.

Review 1. The chloroplast genome.

2. Localization and nucleotide sequences of the tRNA GCC (Gly) , tRNA GUC (Asp) and tRNA GCA (Cys) genes from wheat chloroplast.

3. Processing of mono-, di- and tricistronic transfer RNAs precursors in a spinach or pea chloroplast soluble extract.

4. Characterization of P. sativum chloroplast psbA transcripts produced in vivo, in vitro and in E. coli.

5. Nucleotide sequences of transfer RNA genes in the Pisum sativum chloroplast DNA.

6. Euglena gracilis chloroplast DNA: analysis of a 1.6 kb intron of the psb C gene containing an open reading frame of 458 codons.

7. Pea chloroplast tRNA(Lys) (UUU) gene: transcription and analysis of an intron-containing gene.

8. Chloroplast ribosomal DNA organization in the chromophytic alga Olisthodiscus luteus.

9. Accurate transcription and processing of 19 Euglena chloroplast tRNAs in a Euglena soluble extract.

10. Characterization of the TrnD, TrnK, PsaA locus of Euglena gracilis chloroplast DNA.