Literature DB >> 24307416

DNA sequence organization in the genomes of three related millet plant species.

L Sivaraman1, V S Gupta, P K Ranjekar.   

Abstract

A major portion of the genomes of three millet species, namely, barn yard millet, fox tail millet and little millet has been shown to consist of interspersed repeat and single copy DNA sequences. The interspersed repetitive DNA sequences are both short (0.15-1.0 kilo base pairs, 62-64% and long (>1.5 kilo base pairs, 36-38%) in barn yard millet and little millet while in fox tail millet, only long interspersed repeats (>1.5 kilo base pairs) are present. The length of the interspersed single copy DNA sequences varies in the range of 1.6-2.6 kilo base pairs in all the three species. The repetitive duplexes isolated after renaturation of 1.5 kilo base pairs and 20 kilo base pairs long DNA fragments exhibit a high thermal stability with Tms either equal to or greater than the corresponding native DNAs. The S1 nuclease resistant repetitive DNA duplexes also are thermally stable and reveal the presence of only 1-2% sequence divergence.The present data on the modes of sequence arrangement in millets substantiates the proposed trend in plants, namely, plants with 1C nuclear DNA content of less than 5 picograms have diverse patterns of sequence organization while those with 1C nuclear DNA content greater than 5 picograms have predominantly a short period interspersion pattern.

Entities:  

Year:  1986        PMID: 24307416     DOI: 10.1007/BF00027131

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN: 0167-4412            Impact factor:   4.076


  25 in total

1.  Characterization of the sequence complexity and organization of the Neurospora crassa genome.

Authors:  R Krumlauf; G A Marzluf
Journal:  Biochemistry       Date:  1979-08-21       Impact factor: 3.162

2.  DNA sequence organization in the water mold Achlya.

Authors:  M E Hudspeth; W E Timberlake; R B Goldberg
Journal:  Proc Natl Acad Sci U S A       Date:  1977-10       Impact factor: 11.205

3.  Evolution of repeated DNA sequences by unequal crossover.

Authors:  G P Smith
Journal:  Science       Date:  1976-02-13       Impact factor: 47.728

4.  Characterization of the nuclear genome of pearl millet.

Authors:  C F Wimpee; J R Rawson
Journal:  Biochim Biophys Acta       Date:  1979-04-26

5.  General interspersion of repetitive with non-repetitive sequence elements in the DNA of Xenopus.

Authors:  E H Davidson; B R Hough; C S Amenson; R J Britten
Journal:  J Mol Biol       Date:  1973-06-15       Impact factor: 5.469

6.  Kinetics of renaturation of DNA.

Authors:  J G Wetmur; N Davidson
Journal:  J Mol Biol       Date:  1968-02-14       Impact factor: 5.469

7.  Gene regulation for higher cells: a theory.

Authors:  R J Britten; E H Davidson
Journal:  Science       Date:  1969-07-25       Impact factor: 47.728

Review 8.  Moderately repetitive DNA in evolution.

Authors:  R A Bouchard
Journal:  Int Rev Cytol       Date:  1982

9.  DNA sequence organization in the flax genome.

Authors:  C A Cullis
Journal:  Biochim Biophys Acta       Date:  1981-01-29

Review 10.  Evolution of higher-organism DNA.

Authors:  D E Kohne
Journal:  Q Rev Biophys       Date:  1970-08       Impact factor: 5.318

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  1 in total

1.  cDNA-AFLP analysis reveals differential gene expression in response to salt stress in foxtail millet (Setaria italica L.).

Authors:  Ananthi Jayaraman; Swati Puranik; Neeraj Kumar Rai; Sudhakar Vidapu; Pranav Pankaj Sahu; Charu Lata; Manoj Prasad
Journal:  Mol Biotechnol       Date:  2008-07-01       Impact factor: 2.695

  1 in total

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