Literature DB >> 24298558

Emerging technologies for hybridization based single nucleotide polymorphism detection.

Karel Knez1, Dragana Spasic, Kris P F Janssen, Jeroen Lammertyn.   

Abstract

Detection of single nucleotide polymorphisms (SNPs) is a crucial challenge in the development of a novel generation of diagnostic tools. Accurate detection of SNPs can prove elusive, as the impact of a single variable nucleotide on the properties of a target sequence is limited, even if this sequence consists of only a few nucleotides. New, accurate and facile strategies for the detection of point mutations are therefore absolutely necessary for the increased adoption of point-of-care molecular diagnostics. Currently, PCR and sequencing are mostly applied for diagnosing SNPs. However these methods have serious drawbacks as routine diagnostic tools because of their labour intensity and cost. Several new, more suitable methods can be applied to enable sensitive detection of mutations based on specially designed hybridization probes, mutation recognizing enzymes and thermal denaturation. Here, an overview is presented of the most recent advances in the field of fast and sensitive SNP detection assays with strong potential for integration in point-of-care tests.

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Year:  2014        PMID: 24298558     DOI: 10.1039/c3an01436c

Source DB:  PubMed          Journal:  Analyst        ISSN: 0003-2654            Impact factor:   4.616


  14 in total

1.  Sequence-Specific Covalent Capture Coupled with High-Contrast Nanopore Detection of a Disease-Derived Nucleic Acid Sequence.

Authors:  Maryam Imani Nejad; Ruicheng Shi; Xinyue Zhang; Li-Qun Gu; Kent S Gates
Journal:  Chembiochem       Date:  2017-05-26       Impact factor: 3.164

2.  Metal-DNA Interactions Improve signal in High-Resolution Melting of DNA for Species Differentiation of Plasmodium Parasite.

Authors:  Priyamvada Jain; Babina Chakma; Naveen Singh; Sanjukta Patra; Pranab Goswami
Journal:  Mol Biotechnol       Date:  2017-06       Impact factor: 2.695

3.  DNA nanotechnology for nucleic acid analysis: multifunctional molecular DNA machine for RNA detection.

Authors:  A J Cox; H N Bengtson; K H Rohde; D M Kolpashchikov
Journal:  Chem Commun (Camb)       Date:  2016-12-06       Impact factor: 6.222

4.  Split Spinach Aptamer for Highly Selective Recognition of DNA and RNA at Ambient Temperatures.

Authors:  Nanami Kikuchi; Dmitry M Kolpashchikov
Journal:  Chembiochem       Date:  2016-07-15       Impact factor: 3.164

5.  LNA Thymidine Monomer Enables Differentiation of the Four Single-Nucleotide Variants by Melting Temperature.

Authors:  Judy M Obliosca; Sara Y Cheng; Yu-An Chen; Mariana F Llanos; Yen-Liang Liu; Darren M Imphean; David R Bell; Jeffrey T Petty; Pengyu Ren; Hsin-Chih Yeh
Journal:  J Am Chem Soc       Date:  2017-05-09       Impact factor: 15.419

6.  A mutation-resistant deoxyribozyme OR gate for highly selective detection of viral nucleic acids.

Authors:  Ola Kamar; Sin-Cih Sun; Chieh-Hua Lin; Wan-Yu Chung; Min-Shi Lee; Yu-Chieh Liao; Dmitry M Kolpashchikov; Min-Chieh Chuang
Journal:  Chem Commun (Camb)       Date:  2017-09-21       Impact factor: 6.222

7.  Nonequilibrium Hybridization Enables Discrimination of a Point Mutation within 5-40 °C.

Authors:  Maria Stancescu; Tatiana A Fedotova; Jef Hooyberghs; Alexander Balaeff; Dmitry M Kolpashchikov
Journal:  J Am Chem Soc       Date:  2016-10-04       Impact factor: 15.419

8.  Protected DNA strand displacement for enhanced single nucleotide discrimination in double-stranded DNA.

Authors:  Dmitriy A Khodakov; Anastasia S Khodakova; David M Huang; Adrian Linacre; Amanda V Ellis
Journal:  Sci Rep       Date:  2015-03-04       Impact factor: 4.379

9.  Mismatch detection in DNA monolayers by atomic force microscopy and electrochemical impedance spectroscopy.

Authors:  Maryse D Nkoua Ngavouka; Pietro Capaldo; Elena Ambrosetti; Giacinto Scoles; Loredana Casalis; Pietro Parisse
Journal:  Beilstein J Nanotechnol       Date:  2016-02-09       Impact factor: 3.649

10.  A universal probe design for colorimetric detection of single-nucleotide variation with visible readout and high specificity.

Authors:  Xueping Chen; Dandan Zhou; Huawei Shen; Hui Chen; Wenli Feng; Guoming Xie
Journal:  Sci Rep       Date:  2016-02-02       Impact factor: 4.379

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