Literature DB >> 24297170

Understanding how the complex molecular architecture of mannan-degrading hydrolases contributes to plant cell wall degradation.

Xiaoyang Zhang1, Artur Rogowski, Lei Zhao, Michael G Hahn, Utku Avci, J Paul Knox, Harry J Gilbert.   

Abstract

Microbial degradation of plant cell walls is a central component of the carbon cycle and is of increasing importance in environmentally significant industries. Plant cell wall-degrading enzymes have a complex molecular architecture consisting of catalytic modules and, frequently, multiple non-catalytic carbohydrate binding modules (CBMs). It is currently unclear whether the specificities of the CBMs or the topology of the catalytic modules are the primary drivers for the specificity of these enzymes against plant cell walls. Here, we have evaluated the relationship between CBM specificity and their capacity to enhance the activity of GH5 and GH26 mannanases and CE2 esterases against intact plant cell walls. The data show that cellulose and mannan binding CBMs have the greatest impact on the removal of mannan from tobacco and Physcomitrella cell walls, respectively. Although the action of the GH5 mannanase was independent of the context of mannan in tobacco cell walls, a significant proportion of the polysaccharide was inaccessible to the GH26 enzyme. The recalcitrant mannan, however, was fully accessible to the GH26 mannanase appended to a cellulose binding CBM. Although CE2 esterases display similar specificities against acetylated substrates in vitro, only CjCE2C was active against acetylated mannan in Physcomitrella. Appending a mannan binding CBM27 to CjCE2C potentiated its activity against Physcomitrella walls, whereas a xylan binding CBM reduced the capacity of esterases to deacetylate xylan in tobacco walls. This work provides insight into the biological significance for the complex array of hydrolytic enzymes expressed by plant cell wall-degrading microorganisms.

Entities:  

Keywords:  Carbohydrate-binding Protein; Glycoside Hydrolases; Microscopic Imaging; Plant Cell Wall; Polysaccharide

Mesh:

Substances:

Year:  2013        PMID: 24297170      PMCID: PMC3900950          DOI: 10.1074/jbc.M113.527770

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  36 in total

1.  Enzymatic treatments reveal differential capacities for xylan recognition and degradation in primary and secondary plant cell walls.

Authors:  Cécile Hervé; Artur Rogowski; Harry J Gilbert; J Paul Knox
Journal:  Plant J       Date:  2008-01-06       Impact factor: 6.417

2.  Nomenclature for sugar-binding subsites in glycosyl hydrolases.

Authors:  G J Davies; K S Wilson; B Henrissat
Journal:  Biochem J       Date:  1997-01-15       Impact factor: 3.857

3.  Studies of the cellulolytic system of Trichoderma reesei QM 9414. Analysis of domain function in two cellobiohydrolases by limited proteolysis.

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Journal:  Eur J Biochem       Date:  1988-01-04

4.  4-O-methylation of glucuronic acid in Arabidopsis glucuronoxylan is catalyzed by a domain of unknown function family 579 protein.

Authors:  Breeanna R Urbanowicz; Maria J Peña; Supriya Ratnaparkhe; Utku Avci; Jason Backe; Heather F Steet; Marcus Foston; Hongjia Li; Malcolm A O'Neill; Arthur J Ragauskas; Alan G Darvill; Charles Wyman; Harry J Gilbert; William S York
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-14       Impact factor: 11.205

5.  X4 modules represent a new family of carbohydrate-binding modules that display novel properties.

Authors:  David N Bolam; Hefang Xie; Gavin Pell; Deborah Hogg; Greta Galbraith; Bernard Henrissat; Harry J Gilbert
Journal:  J Biol Chem       Date:  2004-03-05       Impact factor: 5.157

6.  Homologous catalytic domains in a rumen fungal xylanase: evidence for gene duplication and prokaryotic origin.

Authors:  H J Gilbert; G P Hazlewood; J I Laurie; C G Orpin; G P Xue
Journal:  Mol Microbiol       Date:  1992-08       Impact factor: 3.501

7.  The Cellvibrio japonicus mannanase CjMan26C displays a unique exo-mode of action that is conferred by subtle changes to the distal region of the active site.

Authors:  Alan Cartmell; Evangelos Topakas; Valérie M-A Ducros; Michael D L Suits; Gideon J Davies; Harry J Gilbert
Journal:  J Biol Chem       Date:  2008-09-17       Impact factor: 5.157

8.  The non-catalytic cellulose-binding domain of a novel cellulase from Pseudomonas fluorescens subsp. cellulosa is important for the efficient hydrolysis of Avicel.

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Journal:  Biochem J       Date:  1995-08-01       Impact factor: 3.857

9.  How nature can exploit nonspecific catalytic and carbohydrate binding modules to create enzymatic specificity.

Authors:  Fiona Cuskin; James E Flint; Tracey M Gloster; Carl Morland; Arnaud Baslé; Bernard Henrissat; Pedro M Coutinho; Andrea Strazzulli; Alexandra S Solovyova; Gideon J Davies; Harry J Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-03       Impact factor: 11.205

10.  Differential recognition of plant cell walls by microbial xylan-specific carbohydrate-binding modules.

Authors:  Lesley McCartney; Anthony W Blake; James Flint; David N Bolam; Alisdair B Boraston; Harry J Gilbert; J Paul Knox
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-14       Impact factor: 11.205

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  18 in total

1.  CELLULOSE SYNTHASE-LIKE A2, a glucomannan synthase, is involved in maintaining adherent mucilage structure in Arabidopsis seed.

Authors:  Li Yu; Dachuan Shi; Junling Li; Yingzhen Kong; Yanchong Yu; Guohua Chai; Ruibo Hu; Juan Wang; Michael G Hahn; Gongke Zhou
Journal:  Plant Physiol       Date:  2014-02-25       Impact factor: 8.340

2.  In-Frame Deletions Allow Functional Characterization of Complex Cellulose Degradation Phenotypes in Cellvibrio japonicus.

Authors:  Cassandra E Nelson; Jeffrey G Gardner
Journal:  Appl Environ Microbiol       Date:  2015-06-26       Impact factor: 4.792

3.  Dynamics of intracellular mannan and cell wall folding in the drought responses of succulent Aloe species.

Authors:  Louise Isager Ahl; Jozef Mravec; Bodil Jørgensen; Paula J Rudall; Nina Rønsted; Olwen M Grace
Journal:  Plant Cell Environ       Date:  2019-06-03       Impact factor: 7.228

4.  Systems analysis in Cellvibrio japonicus resolves predicted redundancy of β-glucosidases and determines essential physiological functions.

Authors:  Cassandra E Nelson; Artur Rogowski; Carl Morland; Joshua A Wilhide; Harry J Gilbert; Jeffrey G Gardner
Journal:  Mol Microbiol       Date:  2017-02-28       Impact factor: 3.501

5.  A polysaccharide utilization locus from an uncultured bacteroidetes phylotype suggests ecological adaptation and substrate versatility.

Authors:  A K Mackenzie; A E Naas; S K Kracun; J Schückel; J U Fangel; J W Agger; W G T Willats; V G H Eijsink; P B Pope
Journal:  Appl Environ Microbiol       Date:  2014-10-17       Impact factor: 4.792

Review 6.  Polysaccharide degradation systems of the saprophytic bacterium Cellvibrio japonicus.

Authors:  Jeffrey G Gardner
Journal:  World J Microbiol Biotechnol       Date:  2016-06-04       Impact factor: 3.312

7.  Comprehensive functional characterization of the glycoside hydrolase family 3 enzymes from Cellvibrio japonicus reveals unique metabolic roles in biomass saccharification.

Authors:  Cassandra E Nelson; Mohamed A Attia; Artur Rogowski; Carl Morland; Harry Brumer; Jeffrey G Gardner
Journal:  Environ Microbiol       Date:  2017-12-07       Impact factor: 5.491

8.  Heteromannans are the predominant hemicelluloses in the gametophytic stem of the umbrella moss Hypnodendron menziesii and occur in the walls of all cell types.

Authors:  Ramesh R Chavan; Adya P Singh; Awanis Azizan; Philip J Harris
Journal:  Planta       Date:  2021-06-04       Impact factor: 4.116

9.  Mannans and endo-β-mannanase transcripts are located in different seed compartments during Brassicaceae germination.

Authors:  Néstor Carrillo-Barral; Angel J Matilla; María Del Carmen Rodríguez-Gacio; Raquel Iglesias-Fernández
Journal:  Planta       Date:  2017-11-21       Impact factor: 4.116

10.  A complex gene locus enables xyloglucan utilization in the model saprophyte Cellvibrio japonicus.

Authors:  Johan Larsbrink; Andrew J Thompson; Magnus Lundqvist; Jeffrey G Gardner; Gideon J Davies; Harry Brumer
Journal:  Mol Microbiol       Date:  2014-09-17       Impact factor: 3.501

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