Literature DB >> 24295960

Heme-dependent dioxygenases in tryptophan oxidation.

Jiafeng Geng1, Aimin Liu2.   

Abstract

L-Tryptophan is an essential amino acid for mammals. It is utilized not only for protein synthesis but also for the biosynthesis of serotonin and melatonin by the serotonin pathway as well as nicotinamide adenine dinucleotide by the kynurenine pathway. Although the kynurenine pathway is responsible for the catabolism of over 90% of l-tryptophan in the mammalian intracellular and extracellular pools, the scientific field was dominated in the last century by studies of the serotonin pathway, due to the physiological significance of the latter's catabolic intermediates and products. However, in the past decade, the focus gradually reversed as the link between the kynurenine pathway and various neurodegenerative disorders and immune diseases is increasingly highlighted. Notably, the first step of this pathway, which is catalyzed by heme-dependent dioxygenases, has been proven to be a potential target for immune regulation and cancer treatment. A thorough understanding of the intriguing chemistry of the heme-dependent dioxygenases may yield insight for the drug discovery of these prevalent illnesses. In this review, we survey enzymatic and mechanistic studies, initially started by Kotake and Masayama over 70 years ago, at the molecular level on the heme-dependent tryptophan dioxygenation reactions.
Copyright © 2013 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Free radical; High-valence iron; Metalloprotein; Oxygen activation; Peroxide reaction; Reactive oxygen species

Mesh:

Substances:

Year:  2013        PMID: 24295960     DOI: 10.1016/j.abb.2013.11.009

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  13 in total

Review 1.  Oxygen activation by mononuclear nonheme iron dioxygenases involved in the degradation of aromatics.

Authors:  Yifan Wang; Jiasong Li; Aimin Liu
Journal:  J Biol Inorg Chem       Date:  2017-01-13       Impact factor: 3.358

2.  What is the tryptophan kynurenine pathway and why is it important to neurotherapeutics?

Authors:  Ian Davis; Aimin Liu
Journal:  Expert Rev Neurother       Date:  2015-05-24       Impact factor: 4.618

3.  Conformational Plasticity in Human Heme-Based Dioxygenases.

Authors:  Khoa N Pham; Ariel Lewis-Ballester; Syun-Ru Yeh
Journal:  J Am Chem Soc       Date:  2020-12-29       Impact factor: 15.419

Review 4.  Oxygen Activation and Radical Transformations in Heme Proteins and Metalloporphyrins.

Authors:  Xiongyi Huang; John T Groves
Journal:  Chem Rev       Date:  2017-12-29       Impact factor: 60.622

5.  Stepwise O-Atom Transfer in Heme-Based Tryptophan Dioxygenase: Role of Substrate Ammonium in Epoxide Ring Opening.

Authors:  Inchul Shin; Brett R Ambler; Daniel Wherritt; Wendell P Griffith; Amanda C Maldonado; Ryan A Altman; Aimin Liu
Journal:  J Am Chem Soc       Date:  2018-03-15       Impact factor: 15.419

6.  Structural Basis of Inhibitor Selectivity in Human Indoleamine 2,3-Dioxygenase 1 and Tryptophan Dioxygenase.

Authors:  Khoa N Pham; Ariel Lewis-Ballester; Syun-Ru Yeh
Journal:  J Am Chem Soc       Date:  2019-11-14       Impact factor: 15.419

7.  A new regime of heme-dependent aromatic oxygenase superfamily.

Authors:  Inchul Shin; Yifan Wang; Aimin Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2021-10-26       Impact factor: 11.205

Review 8.  Bis-Fe(IV): nature's sniper for long-range oxidation.

Authors:  Jiafeng Geng; Ian Davis; Fange Liu; Aimin Liu
Journal:  J Biol Inorg Chem       Date:  2014-04-11       Impact factor: 3.358

9.  Kinetic and Spectroscopic Characterization of the Catalytic Ternary Complex of Tryptophan 2,3-Dioxygenase.

Authors:  Jiafeng Geng; Andrew C Weitz; Kednerlin Dornevil; Michael P Hendrich; Aimin Liu
Journal:  Biochemistry       Date:  2020-07-23       Impact factor: 3.162

Review 10.  Different Mechanisms of Catalytic Complex Formation in Two L-Tryptophan Processing Dioxygenases.

Authors:  Karin Nienhaus; G Ulrich Nienhaus
Journal:  Front Mol Biosci       Date:  2018-01-04
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