Literature DB >> 24292973

Directed evolution of GH43 β-xylosidase XylBH43 thermal stability and L186 saturation mutagenesis.

Sanjay K Singh1, Chamroeun Heng, Jay D Braker, Victor J Chan, Charles C Lee, Douglas B Jordan, Ling Yuan, Kurt Wagschal.   

Abstract

Directed evolution of β-xylosidase XylBH43 using a single round of gene shuffling identified three mutations, R45K, M69P, and L186Y, that affect thermal stability parameter K(t)⁰·⁵ by -1.8 ± 0.1, 1.7 ± 0.3, and 3.2 ± 0.4 °C, respectively. In addition, a cluster of four mutations near hairpin loop-D83 improved K(t)⁰·⁵ by ~3 °C; none of the individual amino acid changes measurably affect K(t)⁰·⁵. Saturation mutagenesis of L186 identified the variant L186K as having the most improved K(t)⁰·⁵ value, by 8.1 ± 0.3 °C. The L186Y mutation was found to be additive, resulting in K(t)⁰·⁵ increasing by up to 8.8 ± 0.3 °C when several beneficial mutations were combined. While k cat of xylobiose and 4-nitrophenyl-β-D-xylopyranoside were found to be depressed from 8 to 83 % in the thermally improved mutants, K(m), K(ss) (substrate inhibition), and K(i) (product inhibition) values generally increased, resulting in lessened substrate and xylose inhibition.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 24292973     DOI: 10.1007/s10295-013-1377-0

Source DB:  PubMed          Journal:  J Ind Microbiol Biotechnol        ISSN: 1367-5435            Impact factor:   3.346


  33 in total

Review 1.  The depth of chemical time and the power of enzymes as catalysts.

Authors:  R Wolfenden; M J Snider
Journal:  Acc Chem Res       Date:  2001-12       Impact factor: 22.384

2.  Microplate-based active/inactive 1° screen for biomass degrading enzyme library purification and gene discovery.

Authors:  Kurt Wagschal; Charles C Lee
Journal:  J Microbiol Methods       Date:  2012-01-20       Impact factor: 2.363

3.  Domain analysis of a modular alpha-L-Arabinofuranosidase with a unique carbohydrate binding strategy from the fiber-degrading bacterium Fibrobacter succinogenes S85.

Authors:  Shosuke Yoshida; Charles W Hespen; Robert L Beverly; Roderick I Mackie; Isaac K O Cann
Journal:  J Bacteriol       Date:  2010-08-13       Impact factor: 3.490

4.  Site-directed mutagenesis and saturation mutagenesis for the functional study of transcription factors involved in plant secondary metabolite biosynthesis.

Authors:  Sitakanta Pattanaik; Joshua R Werkman; Que Kong; Ling Yuan
Journal:  Methods Mol Biol       Date:  2010

Review 5.  How enzymes adapt: lessons from directed evolution.

Authors:  F H Arnold; P L Wintrode; K Miyazaki; A Gershenson
Journal:  Trends Biochem Sci       Date:  2001-02       Impact factor: 13.807

6.  Enzyme-coupled assay for beta-xylosidase hydrolysis of natural substrates.

Authors:  Kurt Wagschal; Diana Franqui-Espiet; Charles C Lee; George H Robertson; Dominic W S Wong
Journal:  Appl Environ Microbiol       Date:  2005-09       Impact factor: 4.792

Review 7.  Directed evolution of enzyme stability.

Authors:  Vincent G H Eijsink; Sigrid Gåseidnes; Torben V Borchert; Bertus van den Burg
Journal:  Biomol Eng       Date:  2005-06

8.  DNA shuffling of a family of genes from diverse species accelerates directed evolution.

Authors:  A Crameri; S A Raillard; E Bermudez; W P Stemmer
Journal:  Nature       Date:  1998-01-15       Impact factor: 49.962

9.  Cumulative effect of intragenic amino-acid replacements on the thermostability of a protein.

Authors:  M Matsumura; S Yasumura; S Aiba
Journal:  Nature       Date:  1986 Sep 25-Oct 1       Impact factor: 49.962

Review 10.  Properties and applications of microbial beta-D-xylosidases featuring the catalytically efficient enzyme from Selenomonas ruminantium.

Authors:  Douglas B Jordan; Kurt Wagschal
Journal:  Appl Microbiol Biotechnol       Date:  2010-03-30       Impact factor: 4.813

View more
  3 in total

1.  Chromohalobacter salixigens Uronate Dehydrogenase: Directed Evolution for Improved Thermal Stability and Mutant CsUDH-inc X-ray Crystal Structure.

Authors:  Kurt Wagschal; Victor J Chan; Jose H Pereira; Peter H Zwart; Banumathi Sankaran
Journal:  Process Biochem       Date:  2020-02-14       Impact factor: 4.885

2.  Highly thermostable GH39 β-xylosidase from a Geobacillus sp. strain WSUCF1.

Authors:  Aditya Bhalla; Kenneth M Bischoff; Rajesh K Sani
Journal:  BMC Biotechnol       Date:  2014-12-23       Impact factor: 2.563

3.  Development of Therapeutic Chimeric Uricase by Exon Replacement/Restoration and Site-Directed Mutagenesis.

Authors:  Guangrong Xie; Weizhen Yang; Jing Chen; Miaomiao Li; Nan Jiang; Baixue Zhao; Si Chen; Min Wang; Jianhua Chen
Journal:  Int J Mol Sci       Date:  2016-05-20       Impact factor: 5.923

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.