Literature DB >> 24291213

Universality and predictability in molecular quantitative genetics.

Armita Nourmohammad1, Torsten Held, Michael Lässig.   

Abstract

Molecular traits, such as gene expression levels or protein binding affinities, are increasingly accessible to quantitative measurement by modern high-throughput techniques. Such traits measure molecular functions and, from an evolutionary point of view, are important as targets of natural selection. We review recent developments in evolutionary theory and experiments that are expected to become building blocks of a quantitative genetics of molecular traits. We focus on universal evolutionary characteristics: these are largely independent of a trait's genetic basis, which is often at least partially unknown. We show that universal measurements can be used to infer selection on a quantitative trait, which determines its evolutionary mode of conservation or adaptation. Furthermore, universality is closely linked to predictability of trait evolution across lineages. We argue that universal trait statistics extends over a range of cellular scales and opens new avenues of quantitative evolutionary systems biology.
Copyright © 2013. Published by Elsevier Ltd.

Mesh:

Year:  2013        PMID: 24291213     DOI: 10.1016/j.gde.2013.11.001

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  9 in total

Review 1.  Effective models and the search for quantitative principles in microbial evolution.

Authors:  Benjamin H Good; Oskar Hallatschek
Journal:  Curr Opin Microbiol       Date:  2018-12-06       Impact factor: 7.934

2.  Multiple-Line Inference of Selection on Quantitative Traits.

Authors:  Nico Riedel; Bhavin S Khatri; Michael Lässig; Johannes Berg
Journal:  Genetics       Date:  2015-07-02       Impact factor: 4.562

3.  On the deformability of an empirical fitness landscape by microbial evolution.

Authors:  Djordje Bajić; Jean C C Vila; Zachary D Blount; Alvaro Sánchez
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-15       Impact factor: 11.205

4.  Systems biology and the analysis of genetic variation.

Authors:  Shamil R Sunyaev; Frederick P Roth
Journal:  Curr Opin Genet Dev       Date:  2013-11-28       Impact factor: 5.578

5.  Optimal evolutionary decision-making to store immune memory.

Authors:  Oskar H Schnaack; Armita Nourmohammad
Journal:  Elife       Date:  2021-04-28       Impact factor: 8.140

6.  Antigenic evolution of human influenza H3N2 neuraminidase is constrained by charge balancing.

Authors:  Yiquan Wang; Ruipeng Lei; Armita Nourmohammad; Nicholas C Wu
Journal:  Elife       Date:  2021-12-08       Impact factor: 8.140

7.  Phylogenetic divergence of cell biological features.

Authors:  Michael Lynch
Journal:  Elife       Date:  2018-06-21       Impact factor: 8.140

Review 8.  Cancer Evolution and the Limits of Predictability in Precision Cancer Medicine.

Authors:  Kamil A Lipinski; Louise J Barber; Matthew N Davies; Matthew Ashenden; Andrea Sottoriva; Marco Gerlinger
Journal:  Trends Cancer       Date:  2016-01-29

9.  Host-Pathogen Coevolution and the Emergence of Broadly Neutralizing Antibodies in Chronic Infections.

Authors:  Armita Nourmohammad; Jakub Otwinowski; Joshua B Plotkin
Journal:  PLoS Genet       Date:  2016-07-21       Impact factor: 5.917

  9 in total

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