| Literature DB >> 24289245 |
Jana Breitfeld, Susanne Martens, Jürgen Klammt, Marina Schlicke, Roland Pfäffle, Kerstin Krause, Kerstin Weidle, Dorit Schleinitz, Michael Stumvoll, Dagmar Führer, Peter Kovacs, Anke Tönjes1.
Abstract
BACKGROUND: The complex process of development of the pituitary gland is regulated by a number of signalling molecules and transcription factors. Mutations in these factors have been identified in rare cases of congenital hypopituitarism but for most subjects with combined pituitary hormone deficiency (CPHD) genetic causes are unknown. Bone morphogenetic proteins (BMPs) affect induction and growth of the pituitary primordium and thus represent plausible candidates for mutational screening of patients with CPHD.Entities:
Year: 2013 PMID: 24289245 PMCID: PMC4175098 DOI: 10.1186/1472-6823-13-56
Source DB: PubMed Journal: BMC Endocr Disord ISSN: 1472-6823 Impact factor: 2.763
Patient characteristics
| m | PIT1, PROP1, HESX1, LHX3 | / | + | + | + | + | hypoplastic | / | growth retardation and hypopituitarism | childhood/adolesence | no | |
| m | PIT1, PROP1, HESX1, LHX3 | SOX2, OTX2 | + | + | + | + | hypoplastic | midline defect, right anophthalmia, mental retardation | severe malformations | birth | no | |
| f | PIT1, PROP1, HESX1, LHX3 | / | + | + | + | + | hypoplastic | brain atrophy | growth retardation | childhood/adolesence | no | |
| f | PIT1, PROP1, HESX-1 | / | + | + | no | no | hypoplastic | / | growth retardation | childhood/adolesence | no | |
| m | PIT1, PROP1, HESX-1, LHX3 | LHX4 | + | + | + | + | hypoplastic | sclerosed nodules at the hands, short metacarpalia IV, azoospermia, | growth retardation | childhood/adolesence | no | |
| m | PIT1, PROP1, HESX1, LHX3 | LHX4 | + | + | no | + | n.a. | / | unknown | |||
| f | PIT1, PROP1, HESX1, LHX3 | / | + | + | no | + | small and ectopic neuropituitary gland | left optic atrophy | growth retardation, postpartal hypoglycaemia | childhood/adolesence | no | |
| m | PIT1, PROP1, HESX1, LHX3 | GLI2 | + | + | no | + | small pituitary and ectopic neuropituitary gland | / | unknown | unknown | no | |
| m | PIT1, PROP1, HESX1, LHX3 | / | no | + | no | + | ectopic adeno- and neuropituitary gland | / | prolonged jaundice, hypothyroidism | early infancy | no | |
| f | PIT1, PROP1, HESX1, LHX3 | / | + | + | + | + | hypoplastic | / | hypoglycaemia, hypothyroidism | early infancy | no | |
| m | PIT1, PROP1 | LHX4, GLI2 | + | no | + | + | n.a. | Asperger syndrome | unknown | |||
| m | PIT1, PROP1, HESX1, LHX3 | / | + | + | + | + | n.a. | / | growth retardation, puperty onset at the age of 18, hypogonadism | childhood/adolesence | yes | |
| m | PIT1, PROP1, HESX1, LHX3 | / | + | + | no | + | n.a. | / | unknown | |||
| m | PIT1, PROP1, HESX1, LHX3 | / | + | + | + | + | hypoplastic | / | pericardial effusion | adulthood | yes | |
| m | PIT1, PROP1, HESX1, LHX3 | / | + | + | no | + | normal size, but ectopic neuropituitary gland | / | prolonged jaundice, hypoglycaemia, micropenis, muscular hypotonia, hypothyroidism | early infancy | no | |
| f | PIT1, PROP1, HESX1, LHX3 | LHX4 | + | + | + | + | hypoplastic | / | hypoglycaemia, hyponatraemia, hepatopathy, muscular hypotonia | 3rd day of life | n.a. | |
| m | PIT1, PROP1, HESX1, LHX3 | GLI2, SHH | + | + | + | + | hypoplastic | / | complex facial malformations | childhood/adolesence | no | |
| m | PIT1, PROP1, HESX1, LHX3 | / | + | + | + | + | small and ectopic neuropituitary gland | arachnodactyly, pulmonalisectasia, cryptorchidism, scoliosis | unknown | |||
| f | PIT1, PROP1, HESX1, LHX3 | / | + | + | no | + | hypoplastic | / | growth retardation | childhood/adolesence | no | |
m = male; f = female; MRI-scan = magnetic resonance imaging; MPHD = screening for PIT1, PROP1, HESX1, LHX3; PIT1 = POU domain, class 1, transcription factor 1; PROP1 = Homeobox protein prophet of Pit-1; HesX-1 = HESX homeobox 1; SOX2 = SRY (sex determining region Y)-box 2; OTX2 = SRY (sex determining region Y)-box 2 ; LHX4 = LIM/homeobox protein Lhx4; GLI2 = Zinc finger protein GLI2; SHH = Sonic hedgehog homolog; GH = growth hormone; TSH = thyroid stimulating hormone; LH = luteinizing hormone; FSH = follicle stimulating hormone; ACTH = adrenocorticotropic hormone; n.a. = not available.
SNPs within identified by sequencing of 19 subjects with congenital combined pituitary hormone insufficiency
| 5′-UTR | Exon 1# | rs35123420 | C = 0.040 | G/C | | C = 0.026 |
| | Exon 1 | rs141364472 | n.a. | G/A | | A = 0.026 |
| | Exon 2 | rs2273073 | G = 0.028 | T/G | p.Ser37Ala | G = 0.026 |
| coding | Exon 2 | rs1049007 | A = 0.250 | G/A | synonymous | A = 0.342 |
| region | Exon 3 | rs235768 | A = 0.240 | T/A | p.Arg190Ser | A = 0.342 |
| | Exon 3 | rs13037675 | T = 0.046 | C/T | synonymous | T = 0.026 |
| | Exon 3 | rs15705 | C = 0.280 | A/C | | C = 0.368 |
| 3′-UTR | Exon 3 | rs3178250 | C = 0.264 | T/C | | C = 0.368 |
| | Exon 3 | rs235769 | A = 0.234 | G/A | | A = 0.368 |
| | Exon 3 | rs170986 | A = 0.162 | C/A | | A = 0.053 |
| 5′-UTR | Intron 2 | rs2855532 | T = 0.427 | C/T | | T = 0.342 |
| | Intron 2 | rs2761880 | T = 0.221 | C/T | | T = 0.053 |
| coding | Exon 4 | rs17563 | C = 0.373 | C/T | p.Val152Ala | T = 0.447 |
| region | | |||||
| | Exon 2 | rs41274738 | T = 0.018 | C/T | synonymous | T = 0.026 |
| | Intron 2* | rs192121279 | n.a. | G/A | p.Thr105Met | A = 0.026 |
| | Intron 2* | rs6070031 | T = 0.281 | C/T | | T = 0.421 |
| | | | ||||
| coding | Exon 4 | rs61733436 | T = 0.005 | C/T | synonymous | T = 0.026 |
| region | Intron 4 | rs6014948 | T = 0.069 | C/T | | T = 0.053 |
| | Intron 4 | rs6070008 | T = 0.466 | A/T | | T = 0.421 |
| | Exon 5 | rs61733438 | C = 0.005 | T/C | p.Asn321Ser | C = 0.026 |
| | Intron 6$ | rs2148328 | A = 0.466 | A/G | p.Ala399Gly | G = 0.474 |
| | Intron 7 | rs10375 | C = 0.484 | C/T | | T = 0.447 |
| | Intron 7 | rs151255710 | n.a. | A/G | | G = 0.026 |
| | Intron 7 | rs17480735 | A = 0.051 | G/A | | A = 0.105 |
| | Intron 7 | rs6025418 | G = 0.479 | A/G | | G = 0.447 |
| 3′-UTR | Intron 7 | rs6025417 | C = 0.478 | G/C | | C = 0.447 |
| | Intron 7 | rs6025416 | C = 0.452 | T/C | | C = 0.447 |
| | Intron 7 | rs6014947 | T = 0.460 | C/T | | T = 0.474 |
| | Intron 7 | rs6025415 | C = 0.478 | G/C | | C = 0.473 |
| Intron 7 | rs6014946 | C = 0.461 | A/C | C = 0.473 | ||
SNP = single nucleotide polymorphism, BMP = bone morphogenetic protein; MAF = minor allele frequency; MM = major allele, mm = minor allele in analyzed cohort; aa = amino acid; UTR = untranslated region; n.a. = not available; novel identified SNPs are presented in bold; #) only in ENST00000378827 but not in NM_001200 part of exon 1 (5′UTR) ; *) variants are located within an additional exon only present in isoform BMP7 ENST00000433911; $) for transcript variant ENST00000450594 the SNPs is located within the coding region.
Assessment of potential functional relevance of identified variants
| | | | | | | | |
| rs2273073 | Ser37Ala | - tolerated | - tolerated | - aas changed | - aas changed | - tolerated | - score 0.123 |
| - heterozygous in TGP | - score 0.61 | - neutral | |||||
| - known disease mutation at this position (HGMD CM034611) | - disease associated variation | ||||||
| - protein features (might be) affected | (probability – 0.527) | ||||||
| - splice site changes | | | | ||||
| rs235768 | Arg190Ser | - functional relevance cannot be predicted explicit | - functional relevance cannot be predicted explicit | - aas changed | - aas changed | - tolerated | - score 0.293 |
| - homozygous in TGP | | - score -0.45 | - neutral | ||||
| - protein features (might be) affected | - disease associated variation | ||||||
| - splice site changes | (probability – 0.974) | ||||||
| | | | | | | | |
| rs17563 | Val152Ala | - tolerated | - tolerated | - aas changed | - aas changed | - tolerated | - score 0.145 |
| - homozygous in TGP | - score -0.08 | - neutral | |||||
| - protein features (might be) affected | - disease associated variation | ||||||
| - splice site changes | (probability – 0.755) | ||||||
| c.899G > C | Arg300Pro | - substantial evidence for functional consequences | - substantial evidence for functional consequences | - disease causing | - aas changed | - tolerated | - score 0.381 |
| - aas changed | - score -0.78 | - neutral | |||||
| - protein features (might be) affected | - disease associated variation | ||||||
| - splice site changes | (probability – 0.906) | ||||||
| | | | | | | | |
| rs192121279 | Thr105Met | - deleterious | - unknown | - not found | n.a. | - No dbSNP mapping(s) | - score 0.466 |
| - neutral | |||||||
| c.611 + 3366C > T | intronic | n.a. | n.a. | n.a. | n.a. | -n.a. | n.a. |
| rs61733438 | Asn321Ser | - tolerated | - tolerated | - disease causing | - aas changed | - tolerated | - score 0.278 |
| - aas changed | - score -0.92 | - neutral | |||||
| - heterozygous in TGP | - disease associated variation | | | ||||
| - protein features (might be) affected | |||||||
| - splice site changes | (probability – 0.848) | ||||||
| rs2148328 | Ala399Gly | - tolerated | - unknown | - aas changed | - aas changed | - No dbSNP mapping(s) | - score 0.540 |
| - protein features (might be) affected | - “Actionable Hypotheses”$ |
$) Loss of relative solvent accessibility (P = 0.0071); Gain of loop (P = 0.0166); Loss of helix (P = 0.0376); Loss of solvent accessibility (P = 0.0442); aas = amino acid sequence, TGP = 1000 Genome Project.