| Literature DB >> 24287856 |
Tetsushi Sadakata1, Yo Shinoda, Akira Sato, Hirotoshi Iguchi, Chiaki Ishii, Makoto Matsuo, Ryosuke Yamaga, Teiichi Furuichi.
Abstract
Autism spectrum disorder (ASD) is a neurodevelopmental disorder characterized by disturbances in interpersonal relationships and behavior. Although the prevalence of autism is high, effective treatments have not yet been identified. Recently, genome-wide association studies have identified many mutations or variations associated with ASD risk on many chromosome loci and genes. Identification of the biological roles of these mutations or variations is necessary to identify the mechanisms underlying ASD pathogenesis and to develop clinical treatments. At present, mice harboring genetic modifications of ASD-associated gene candidates are the best animal models to analyze hereditary factors involved in autism. In this report, the biological significance of ASD-associated genes is discussed by examining the phenotypes of mouse models with ASD-associated mutations or variations in mouse homologs, with a focus on mice harboring genetic modifications of the Caps2/Cadps2 (Ca2+-dependent activator protein for secretion 2) gene.Entities:
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Year: 2013 PMID: 24287856 PMCID: PMC3881117 DOI: 10.3390/ijerph10126335
Source DB: PubMed Journal: Int J Environ Res Public Health ISSN: 1660-4601 Impact factor: 3.390
ASD-associated genes and their functions.
| Gene symbol (Cytoband) | Molecular function, property | Gene symbol (Cytoband) | Molecular function, property |
|---|---|---|---|
| DISC1 | LIS1/NUDE1/14-3-3ε, PDE4B, GSK3/β−catenin pathway | PTPN11 | Noonan syndrome, protein Tyr phospholyase |
| NRXN1 | Cell adhesion, synapse assembly, interact with NLGL1 | CHD8 | DNA helicase, transcription repressor, β−catenin binding |
| SLC25A12 | Mitochondrial Asp/Glu transport | CYFIP1 | Interact with FMR1 and WAVE |
| TBR1 | T-box brain protein 1, transcriptional regulation | UBE3A | Ubiquitin ligase, Angelman syndrome |
| OXTR | Oxytocin receptor (Gq-PLC-coupled) | GABRB3 (15q11.2-q12) | GABA(A) receptor beta-3 subunit |
| CNTN4 | Immunoglobulin superfamily cell adhesion, axon connection | PRKCB | Ca2+-activated protein kinase C-β |
| SLC9A9 | Sodium/proton exchanger, late recycling endosome | CACNA1H | Voltage dependent Ca2+ channel alpha 1H subunit |
| C3orf58 | Uncharacterized, activity-dependent expression | TSC2 | Tuberous sclerosis protein, regulate Rheb GTPase & mTOR |
| TBL1XR1 | Transducin (beta)-like 1 X-linked receptor 1, | A2BP1/FOX1 (16p13.3) | RNA binding, RNA transport, splicing regulator |
| JAKMIP1 | Interact with Janus kinase and microtubule | CREBBP | Transcriptional coactivator, Rubinstein-Taybi syndrome |
| CDH10 | Cell adhesion (type II classical cadherin) | RAI1 | Transcription factor, Smith-Magenis syndrome |
| CDH9 | Cell adhesion (type II classical cadherin) | NF1 | Neurofibromatosis type I, negative regulator of Ras |
| SEMA5A | Axon guidance molecule, neural development | SLC6A4 (17q11.1-q12) | Serotonin plasma membrane transporter |
| NIPBL | Sister chromatid cohesion, Cornelia de Lange syndrome | ITGB3 | Cell adhesion & cell surface signaling, integrin β-chain |
| NSD1 | Transcription coregulator, Sotos syndrome, Weaver syndrome | PLAUR | Receptor for urokinase plasminogen activator |
| GRIK2 | Glutamate receptor, ionotropic, kainate 2, GluR6 | DMPK | Ser/Thr kinase, interact with Rho, Myotonic dystrophy type 1, |
| AHI1 | Cerebellar & cortical development, Joubert syndrome | DYRK1A | Dual-specificity protein kinase, Down syndrome critical region |
| AUTS2 | Autism susceptibility candidate 2 | TBX1 | T-box transcription factor, embryonic tissue development |
| RELN | Extracellular matrix protein, neuronal migration & position | ADSL | Adenylosuccinate lyase, purine synthesis, succinylpurinemic autism |
| SERPINE1 | Serpin peptidase inhibitor, class E, member 1; serine protease inhibitor | SHANK3 | Postsynaptic scaffold protein, synapse function & formation |
| FOXP2 | Forkhead box P2, transcription factor | PTCHD1 | Receptor for Shh, neural tube formation & brain development |
| MET | Proto-oncogene, HGF receptor protein Tyr kinase, | NLGN4X | Cell adhesion, synapse assembly, interact with NRXN1 |
| CADPS2 | Regulate release of neuropeptides & monamines | CDKL5 | Ser/Thr kinase, X-linked infantile spasm syndrome/Rett syndrome |
| EN2 | Homeobox transcription factor, pattern formation of the CNS | ARX | Transcriptional regulation, CNS development, X-linked mental retardation, epilepsy |
| CNTNAP2 | Cell adhesion, interact with K+ channel in myelinated axons | IL1RAPL1 | Interleukin 1 accessary protein like, memory & leaning, X-linked mental retardation |
| CHD7 | CHARGE syndrome, DNA helicase, chromatin remodeling | DMD | Dystrophin, Duchenne & Becker muscular dystrophy, cytoskeletal protein |
| FABP5 | Fatty acid uptake, transport & metabolism | FGD1 | Cdc42 GEF, faciogenital dysplasia, X-linked mental retardation |
| VPS13B | Cohen syndrome, vesicle transport & protein sorting | NLGN3 | Cell adhesion, synapse assembly, interact with NRXN1 |
| TSC1 | Tuberous sclerosis protein, regulate Rheb GTPase & mTOR | ATRX | Chromatin remodeling, alpha-thelassemia/mental retardation syndrome X-linked, |
| PTEN | PIP3dephospholyation, negative regulator of PI3K pathway | FMR1 | mRNA trafficking, fragile X mental retardation |
| DHCR7 | Biosynthesis of cholesterol | AFF2 | Putative transcriptional activator, fragile X E syndrome |
| SHANK2 | Postsynaptic scaffold protein, synapse function & formation | SLC6A8 | Creatine transporter, X-linked creatine deficiency syndrome |
| GRIN2B | Glutamate receptor, ionotropic, N-methyl D-aspartate 2B | MECP2 | Methyl CpG binding protein 2, transcriptional repression, Rett syndrome, development |
| CACNA1C | Voltage-dependent Ca2+ channel α 1C subunit (L type) | RPL10 | Ribosomal protein L10, a component of 60S subunit, translation |
| AVPR1A | Vasopressin receptor (Gq/11-PLC-coupled) |
Modified from the data reported in references [5,12,19].
Figure 1Many ASD-associated genes and gene candidates are involved in synapse function and structure. ASD-associated genes and gene candidates (indicated by underlining) are involved in synaptic connections, synaptic transmission, synaptic plasticity, activity-dependent gene expression, and local translation in synapses.
Figure 2Protein and genomic structure, single-nucleotide polymorphisms, and copy number variations of human CAPS2/CADPS2. , CAPS2 protein structure. There are several alternative splicing variants in mice (see Table 3, [43]). In mouse brain, the major form of CAPS2 protein (full) consists of approximately 1300 amino acid residues (1275–1355 aa). Increased expression of a rare alternative splicing variant lacking exon 3 (deletion of exon 3, dex3) was found in some patients with autism [43]. Exon 3 encodes 111 amino acids. Seven non-synonymous single-nucleotide polymorphisms (SNPs) have been identified within the human CAPS2/CADPS2 gene. , exon-intron structure of the human CAPS2/CADPS2 gene located on 7q31.32. Five transcripts (CAPS2/CADPS2, TAS2R16, RNF148, RNF133, and FEZF1) have been annotated in this region, although CAPS2/CADPS2 is the only gene with an exon-intron structure and characterized to be expressed as a functional protein. , examples of copy number variations (CNVs) affecting CAPS2/CADPS2 on 7q31.32 (for details, see Table 2). Regions affected by six CNVs of the deletion type are indicated by solid lines (CNV1-6). CNV 1–4 have been identified in ASD patients, but CNV-5 and -6 have no evidence for a connection with ASD. CNV-3 causes deletion of 0.75 Mb, including four genes (CAPS2/CADPS2, TAS2R16, RNF148, and RNF133) [16]. CNV-2 causes deletion of 0.94 Mb from exon 9 onwards in CAPS2/CADPS2 [39]. CNV-1 deletes 15 Mb, affecting about 50 genes including CAPS2/CADPS2. CNV-4 causes deletion of 0.044 Mb containing intron 2 of CAPS2/CADPS2, and RNF148 and RNF133 [18]. CNV-5 [47] and CNV-6 [48] delete short sequences of intron 1 in CAPS2/CADPS2. Duplication (0.43 Mb) of CAPS2/CADPS2 was also reported in ASD [44] (not shown in this figure).
Copy number variations around the 7q31.3 region.
| Chromosome loci | Diagnosis (1) | Gender(2)/family (3) | CNV type (4) | CNV size/no. of affected genes | References |
|---|---|---|---|---|---|
| 7q31.1-q31.31 | ASD | M/SPX | loss | 25 genes | [ |
| 7q31.1-q31.32 | autism, DVD | M/SPX | loss | 11 Mb/>50 genes | [ |
| 7q31.1-q32.2 | ASD, DVD | F/SPX | loss | 15.49 Mb/77 genes | [ |
| 7q31.2-q32 | ASD, DVD | M/SPX | loss | 26 Mb/ | [ |
| 7q31.2-q32.2 | autism, DVD, Williams syndrome | F/SPX | loss | 15 Mb/>50 genes | [ |
| 7q31.3 | ASD | -/MPX | loss | 1.52 Mb/2 genes | [ |
| 7q31.3 | ASD | M/SPX | loss | 0.044 Mb/intron 2 of | [ |
| 7q31.31-q31.33 | ASD | M/- | loss | 5.4 Mb | [ |
| 7q31.32 | ASD | -/MPX | loss | 0.75 Mb/4 genes | [ |
| 7q31.32 | ASD | -/MPX | loss | 0.94 Mb/4 genes | [ |
| 7q31.32 | ASD | -/- | loss | 1.52 Mb/7 genes | [ |
| 7q31.32-q34 | autism | M/- | gain | [ | |
| 7q31.3 | ASD | -/- | gain | 0.43 Mb/exon of | [ |
Basic information was obtained from AutDB [49] and the Autism Chromosome Rearrangement Database [50]. (1) ASD, autism spectrum disorder; DVD, developmental verbal dyspraxia. (2) Gender: M, male; F, female; -, unknown. (3) Family: MPX, multiplex; SPX, simplex; -, unknown. (4) CNV: loss, deletion; gain, duplication.
Rare sequence variants (SNPs) of CADPS2 at 7q31.3.
| Variant Type | Allele Change | Residue Change | Reference |
|---|---|---|---|
| Missense | T2405C | I761T | [ |
| Missense | G2419C | V766L | [ |
| Missense | C2504A | T794N | [ |
| Missense | A2896G | T925A | [ |
| Missense | G3286A | D1055N | [ |
| Missense | G3286A | D1055N | [ |
| Missense | G3457A | D1112N | [ |
| Missense | C3722T | T1200M | [ |
| Missense | G983A | Ala297Thr | [ |
| Silent | C2461T | N/A ** | [ |
| Silent | A2539C | N/A | [ |
| Insertion | N/A | N/A | [ |
AutDB (Autism Database [51]) was used to obtain the above information; ** N/A, not available.