Literature DB >> 24285552

Distributed computing and data storage in proteomics: many hands make light work, and a stronger memory.

Kenneth Verheggen1, Harald Barsnes, Lennart Martens.   

Abstract

Modern day proteomics generates ever more complex data, causing the requirements on the storage and processing of such data to outgrow the capacity of most desktop computers. To cope with the increased computational demands, distributed architectures have gained substantial popularity in the recent years. In this review, we provide an overview of the current techniques for distributed computing, along with examples of how the techniques are currently being employed in the field of proteomics. We thus underline the benefits of distributed computing in proteomics, while also pointing out the potential issues and pitfalls involved.
© 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Keywords:  Bioinformatics; Cloud computing; Crowdsourcing; Distributed computing; Parallelized computing

Mesh:

Year:  2013        PMID: 24285552     DOI: 10.1002/pmic.201300288

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  5 in total

1.  ThermoRawFileParser: Modular, Scalable, and Cross-Platform RAW File Conversion.

Authors:  Niels Hulstaert; Jim Shofstahl; Timo Sachsenberg; Mathias Walzer; Harald Barsnes; Lennart Martens; Yasset Perez-Riverol
Journal:  J Proteome Res       Date:  2019-12-06       Impact factor: 4.466

2.  Simulation Testbed for Evaluating Distributed Querying and Searching of Mass Spectrometry Big Data in a Network-based Infrastructure.

Authors:  Umair Mohammad; Fahad Saeed
Journal:  Proc (IEEE Int Conf Big Data Comput Serv Appl)       Date:  2021-10-18

3.  Future opportunities and trends for e-infrastructures and life sciences: going beyond the grid to enable life science data analysis.

Authors:  Afonso M S Duarte; Fotis E Psomopoulos; Christophe Blanchet; Alexandre M J J Bonvin; Manuel Corpas; Alain Franc; Rafael C Jimenez; Jesus M de Lucas; Tommi Nyrönen; Gergely Sipos; Stephanie B Suhr
Journal:  Front Genet       Date:  2015-06-23       Impact factor: 4.599

4.  An update on LNCipedia: a database for annotated human lncRNA sequences.

Authors:  Pieter-Jan Volders; Kenneth Verheggen; Gerben Menschaert; Klaas Vandepoele; Lennart Martens; Jo Vandesompele; Pieter Mestdagh
Journal:  Nucleic Acids Res       Date:  2014-11-05       Impact factor: 16.971

5.  MPA Portable: A Stand-Alone Software Package for Analyzing Metaproteome Samples on the Go.

Authors:  Thilo Muth; Fabian Kohrs; Robert Heyer; Dirk Benndorf; Erdmann Rapp; Udo Reichl; Lennart Martens; Bernhard Y Renard
Journal:  Anal Chem       Date:  2017-12-19       Impact factor: 6.986

  5 in total

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