Literature DB >> 24285476

Synthesis of [1,3, NH2-(15)N3] (5'S)-8,5'-cyclo-2'-deoxyguanosine.

Chanchal K Malik1, Rajat S Das, Ashis K Basu.   

Abstract

To facilitate NMR studies and low-level detection in biological samples by mass spectrometry, [1,3, NH2-(15)N3] (5'S)-8,5'-cyclo-2'-deoxyguanosine was synthesized from imidazole-4,5-dicarboxylic acid in 21 steps. The three (15)N isotopes were introduced during the chemo-enzymatic preparation of [1,3, NH2-(15)N3]-2'-deoxyguanosine using an established procedure. The (15)N-labeled 2'-deoxyguanosine was converted to a 5'-phenylthio derivative, which allowed the 8-5' covalent bond formation via photochemical homolytic cleavage of the C-SPh bond. SeO2 oxidation of C-5' followed by sodium borohydride reduction and deprotection gave the desired product in good yield. The isotopic purity of the [1,3, NH2-(15)N3] (5'S)-8,5'-cyclo-2'-deoxyguanosine was in excess of 99.94 atom% based on liquid chromatography-mass spectrometry measurements.
Copyright © 2013 John Wiley & Sons, Ltd.

Entities:  

Keywords:  15N-S-cdG; cyclo-dG; tandem DNA lesion; γ-radiation damage

Mesh:

Substances:

Year:  2013        PMID: 24285476      PMCID: PMC5382719          DOI: 10.1002/jlcr.3051

Source DB:  PubMed          Journal:  J Labelled Comp Radiopharm        ISSN: 0362-4803            Impact factor:   1.921


  16 in total

1.  Identification and quantification of 8,5'-cyclo-2'-deoxy-adenosine in DNA by liquid chromatography/ mass spectrometry.

Authors:  M Dizdaroglu; P Jaruga; H Rodriguez
Journal:  Free Radic Biol Med       Date:  2001-04-01       Impact factor: 7.376

2.  Enzymatic synthesis of purine deoxynucleoside adducts.

Authors:  M C Chapeau; L J Marnett
Journal:  Chem Res Toxicol       Date:  1991 Nov-Dec       Impact factor: 3.739

3.  The oxidative DNA lesion 8,5'-(S)-cyclo-2'-deoxyadenosine is repaired by the nucleotide excision repair pathway and blocks gene expression in mammalian cells.

Authors:  P J Brooks; D S Wise; D A Berry; J V Kosmoski; M J Smerdon; R L Somers; H Mackie; A Y Spoonde; E J Ackerman; K Coleman; R E Tarone; J H Robbins
Journal:  J Biol Chem       Date:  2000-07-21       Impact factor: 5.157

4.  Structure of (5'S)-8,5'-cyclo-2'-deoxyguanosine in DNA.

Authors:  Hai Huang; Rajat S Das; Ashis K Basu; Michael P Stone
Journal:  J Am Chem Soc       Date:  2011-11-21       Impact factor: 15.419

Review 5.  Quantitation of DNA adducts by stable isotope dilution mass spectrometry.

Authors:  Natalia Tretyakova; Melissa Goggin; Dewakar Sangaraju; Gregory Janis
Journal:  Chem Res Toxicol       Date:  2012-08-28       Impact factor: 3.739

6.  Synthesis and characterization of oligonucleotides containing 5',8-cyclopurine 2'-deoxyribonucleosides: (5'R)-5',8-cyclo-2'-deoxyadenosine, (5'S)-5',8-cyclo-2'-deoxyguanosine, and (5'R)-5',8-cyclo-2'-deoxyguanosine.

Authors:  A Romieu; D Gasparutto; J Cadet
Journal:  Chem Res Toxicol       Date:  1999-05       Impact factor: 3.739

7.  15N-Multilabeled Adenine and Guanine Nucleosides. Syntheses of [1,3,NH(2)-(15)N(3)]- and [2-(13)C-1,3,NH(2)-(15)N(3)]-Labeled Adenosine, Guanosine, 2'-Deoxyadenosine, and 2'-Deoxyguanosine.

Authors:  José-Luis Abad; Barbara L. Gaffney; Roger A. Jones
Journal:  J Org Chem       Date:  1999-09-03       Impact factor: 4.354

8.  Accumulation of (5'S)-8,5'-cyclo-2'-deoxyadenosine in organs of Cockayne syndrome complementation group B gene knockout mice.

Authors:  Güldal Kirkali; Nadja C de Souza-Pinto; Pawel Jaruga; Vilhelm A Bohr; Miral Dizdaroglu
Journal:  DNA Repair (Amst)       Date:  2008-11-18

9.  Measurement of (5'R)- and (5'S)-8,5'-cyclo-2'-deoxyadenosines in DNA in vivo by liquid chromatography/isotope-dilution tandem mass spectrometry.

Authors:  Pawel Jaruga; Yan Xiao; Bryant C Nelson; Miral Dizdaroglu
Journal:  Biochem Biophys Res Commun       Date:  2009-06-23       Impact factor: 3.575

10.  Structures of (5'S)-8,5'-Cyclo-2'-deoxyguanosine Mismatched with dA or dT.

Authors:  Hai Huang; Rajat S Das; Ashis K Basu; Michael P Stone
Journal:  Chem Res Toxicol       Date:  2012-02-06       Impact factor: 3.739

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