Literature DB >> 24284892

Wavelet analysis in ecology and epidemiology: impact of statistical tests.

Bernard Cazelles1, Kévin Cazelles, Mario Chavez.   

Abstract

Wavelet analysis is now frequently used to extract information from ecological and epidemiological time series. Statistical hypothesis tests are conducted on associated wavelet quantities to assess the likelihood that they are due to a random process. Such random processes represent null models and are generally based on synthetic data that share some statistical characteristics with the original time series. This allows the comparison of null statistics with those obtained from original time series. When creating synthetic datasets, different techniques of resampling result in different characteristics shared by the synthetic time series. Therefore, it becomes crucial to consider the impact of the resampling method on the results. We have addressed this point by comparing seven different statistical testing methods applied with different real and simulated data. Our results show that statistical assessment of periodic patterns is strongly affected by the choice of the resampling method, so two different resampling techniques could lead to two different conclusions about the same time series. Moreover, our results clearly show the inadequacy of resampling series generated by white noise and red noise that are nevertheless the methods currently used in the wide majority of wavelets applications. Our results highlight that the characteristics of a time series, namely its Fourier spectrum and autocorrelation, are important to consider when choosing the resampling technique. Results suggest that data-driven resampling methods should be used such as the hidden Markov model algorithm and the 'beta-surrogate' method.

Keywords:  ecology; epidemiology; statistical testing; wavelet analysis

Mesh:

Year:  2013        PMID: 24284892      PMCID: PMC3869155          DOI: 10.1098/rsif.2013.0585

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  19 in total

1.  Travelling waves and spatial hierarchies in measles epidemics.

Authors:  B T Grenfell; O N Bjørnstad; J Kappey
Journal:  Nature       Date:  2001-12-13       Impact factor: 49.962

2.  A primer on the study of transitory dynamics in ecological series using the scale-dependent correlation analysis.

Authors:  Miquel Angel Rodríguez-Arias; Xavier Rodó
Journal:  Oecologia       Date:  2004-01-31       Impact factor: 3.225

3.  Evidence of a shift in the cyclicity of Antarctic seabird dynamics linked to climate.

Authors:  Stéphanie Jenouvrier; Henri Weimerskirch; Christophe Barbraud; Young-Hyang Park; Bernard Cazelles
Journal:  Proc Biol Sci       Date:  2005-05-07       Impact factor: 5.349

Review 4.  Time-dependent spectral analysis of epidemiological time-series with wavelets.

Authors:  Bernard Cazelles; Mario Chavez; Guillaume Constantin de Magny; Jean-Francois Guégan; Simon Hales
Journal:  J R Soc Interface       Date:  2007-08-22       Impact factor: 4.118

5.  The case for chaos in childhood epidemics. II. Predicting historical epidemics from mathematical models.

Authors:  C W Tidd; L F Olsen; W M Schaffer
Journal:  Proc Biol Sci       Date:  1993-12-22       Impact factor: 5.349

6.  Large-scale comparative analysis of pertussis population dynamics: periodicity, synchrony, and impact of vaccination.

Authors:  Hélène Broutin; Jean-François Guégan; Eric Elguero; François Simondon; Bernard Cazelles
Journal:  Am J Epidemiol       Date:  2005-06-15       Impact factor: 4.897

7.  Travelling waves in the occurrence of dengue haemorrhagic fever in Thailand.

Authors:  Derek A T Cummings; Rafael A Irizarry; Norden E Huang; Timothy P Endy; Ananda Nisalak; Kumnuan Ungchusak; Donald S Burke
Journal:  Nature       Date:  2004-01-22       Impact factor: 49.962

8.  Porcupine feeding scars and climatic data show ecosystem effects of the solar cycle.

Authors:  Ilya Klvana; Dominique Berteaux; Bernard Cazelles
Journal:  Am Nat       Date:  2004-08-16       Impact factor: 3.926

Review 9.  Infectious diseases, climate influences, and nonstationarity.

Authors:  Bernard Cazelles; Simon Hales
Journal:  PLoS Med       Date:  2006-08       Impact factor: 11.069

10.  Nonstationary influence of El Niño on the synchronous dengue epidemics in Thailand.

Authors:  Bernard Cazelles; Mario Chavez; Anthony J McMichael; Simon Hales
Journal:  PLoS Med       Date:  2005-04-26       Impact factor: 11.069

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  20 in total

1.  Pathogens trigger top-down climate forcing on ecosystem dynamics.

Authors:  Eric Edeline; Andreas Groth; Bernard Cazelles; David Claessen; Ian J Winfield; Jan Ohlberger; L Asbjørn Vøllestad; Nils C Stenseth; Michael Ghil
Journal:  Oecologia       Date:  2016-02-24       Impact factor: 3.225

2.  Population spatial synchrony enhanced by periodicity and low detuning with environmental forcing.

Authors:  Kyle J Haynes; Jonathan A Walter; Andrew M Liebhold
Journal:  Proc Biol Sci       Date:  2019-05-29       Impact factor: 5.349

3.  Evidence for self-organization in determining spatial patterns of stream nutrients, despite primacy of the geomorphic template.

Authors:  Xiaoli Dong; Albert Ruhí; Nancy B Grimm
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-30       Impact factor: 11.205

4.  Interannual cycles of Hantaan virus outbreaks at the human-animal interface in Central China are controlled by temperature and rainfall.

Authors:  Huaiyu Tian; Pengbo Yu; Bernard Cazelles; Lei Xu; Hua Tan; Jing Yang; Shanqian Huang; Bo Xu; Jun Cai; Chaofeng Ma; Jing Wei; Shen Li; Jianhui Qu; Marko Laine; Jingjun Wang; Shilu Tong; Nils Chr Stenseth; Bing Xu
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-10       Impact factor: 11.205

5.  Clonal interference can cause wavelet-like oscillations of multilocus linkage disequilibrium.

Authors:  Victor Garcia; Emily C Glassberg; Arbel Harpak; Marcus W Feldman
Journal:  J R Soc Interface       Date:  2018-03       Impact factor: 4.118

6.  Looking for compensation at multiple scales in a wetland bird community.

Authors:  Frédéric Barraquand; Coralie Picoche; Christelle Aluome; Laure Carassou; Claude Feigné
Journal:  Ecol Evol       Date:  2022-06-02       Impact factor: 3.167

7.  Cyclic patterns in the central European tick-borne encephalitis incidence series.

Authors:  P Zeman
Journal:  Epidemiol Infect       Date:  2016-10-24       Impact factor: 4.434

8.  Changes in rodent abundance and weather conditions potentially drive hemorrhagic fever with renal syndrome outbreaks in Xi'an, China, 2005-2012.

Authors:  Huai-Yu Tian; Peng-Bo Yu; Angela D Luis; Peng Bi; Bernard Cazelles; Marko Laine; Shan-Qian Huang; Chao-Feng Ma; Sen Zhou; Jing Wei; Shen Li; Xiao-Ling Lu; Jian-Hui Qu; Jian-Hua Dong; Shi-Lu Tong; Jing-Jun Wang; Bryan Grenfell; Bing Xu
Journal:  PLoS Negl Trop Dis       Date:  2015-03-30

9.  Climate Regimes, El Niño-Southern Oscillation, and Meningococcal Meningitis Epidemics.

Authors:  Olusegun Steven Ayodele Oluwole
Journal:  Front Public Health       Date:  2015-07-30

10.  Seasonal Influenza Epidemics and El Niños.

Authors:  Olusegun Steven Ayodele Oluwole
Journal:  Front Public Health       Date:  2015-11-10
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