Literature DB >> 24281649

Interplay between molecule-molecule and molecule-substrate interactions: first-principles study of fluoroform aggregates on a hexagonal ice (0001) surface.

Pawel Rodziewicz1, Bernd Meyer.   

Abstract

The adsorption of fluoroform molecules on a hexagonal ice (0001) surface was studied using static density functional theory (DFT) calculations and Car-Parrinello molecular dynamics (CP-MD) simulations. Extending our previous work on isolated molecules we focus in the present study on the interplay between molecule-molecule and molecule-substrate interactions. Coverages of up to a full monolayer were modeled by introducing two, three and four fluoroform molecules per unit cell of the ice (0001) substrate. Lowest-energy structures of fluoroform aggregates on the ice surface were determined in a systematic search by performing geometry optimizations from a large set of initial configurations chosen by chemical intuition and from snapshots taken from CP-MD simulations. In the vibrational analysis of the optimized geometries both conventional red- and unusual blue-shifting hydrogen bonds were found. The finite temperature stability of the lowest-energy configurations was probed by CP-MD simulations and conformational changes were analyzed in terms of transformations between the global and local minima structures.

Entities:  

Year:  2013        PMID: 24281649     DOI: 10.1039/c3cp53829j

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  2 in total

1.  A priori calculations of the free energy of formation from solution of polymorphic self-assembled monolayers.

Authors:  Jeffrey R Reimers; Dwi Panduwinata; Johan Visser; Yiing Chin; Chunguang Tang; Lars Goerigk; Michael J Ford; Maxine Sintic; Tze-Jing Sum; Michiel J J Coenen; Bas L M Hendriksen; Johannes A A W Elemans; Noel S Hush; Maxwell J Crossley
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-28       Impact factor: 11.205

2.  A computational study of intramolecular hydrogen bonds breaking/formation: impact on the structural flexibility of the ranitidine molecule.

Authors:  Mariana Kozlowska; Jakub Goclon; Pawel Rodziewicz
Journal:  J Mol Model       Date:  2015-03-21       Impact factor: 1.810

  2 in total

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