Literature DB >> 24279853

Integrative mouse and human mRNA studies using WGCNA nominates novel candidate genes involved in the pathogenesis of major depressive disorder.

Karim Malki1, Maria Grazia Tosto, Irfan Jumabhoy, Anbarasu Lourdusamy, Frans Sluyter, Ian Craig, Rudolf Uher, Peter McGuffin, Leonard C Schalkwyk.   

Abstract

AIM: This study aims to identify novel genes associated with major depressive disorder and pharmacological treatment response using animal and human mRNA studies. MATERIALS &
METHODS: Weighted gene coexpression network analysis was used to uncover genes associated with stress factors in mice and to inform mRNA probe set selection in a post-mortem study of depression.
RESULTS: A total of 171 genes were found to be differentially regulated in response to both early and late stress protocols in a mouse study. Ten human genes, orthologous to mouse genes differentially expressed by stress, were also found to be dysregulated in depressed cases in a human post-mortem brain study from the Stanley Foundation Brain Collection.
CONCLUSION: Several novel genes associated with depression were uncovered, including NOVA1 and USP9X. Moreover, we found further evidence in support of hippocampal neurogenesis and peripheral inflammation in major depressive disorder.

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Year:  2013        PMID: 24279853     DOI: 10.2217/pgs.13.154

Source DB:  PubMed          Journal:  Pharmacogenomics        ISSN: 1462-2416            Impact factor:   2.533


  23 in total

1.  Genes and gene networks implicated in aggression related behaviour.

Authors:  Karim Malki; Oliver Pain; Ebba Du Rietz; Maria Grazia Tosto; Jose Paya-Cano; Kenneth N Sandnabba; Sietse de Boer; Leonard C Schalkwyk; Frans Sluyter
Journal:  Neurogenetics       Date:  2014-08-22       Impact factor: 2.660

2.  Identification of prognostic markers of high grade prostate cancer through an integrated bioinformatics approach.

Authors:  Hai Huang; Qin Zhang; Chen Ye; Jian-Min Lv; Xi Liu; Lu Chen; Hao Wu; Lei Yin; Xin-Gang Cui; Dan-Feng Xu; Wen-Hui Liu
Journal:  J Cancer Res Clin Oncol       Date:  2017-08-28       Impact factor: 4.553

3.  Functional Genomic Analyses Identify Pathways Dysregulated in Animal Model of Autism.

Authors:  Ji-Yun Huang; Yun Tian; Hui-Juan Wang; Hong Shen; Huan Wang; Sen Long; Mei-Hua Liao; Zhi-Rong Liu; Ze-Ming Wang; Dan Li; Rong-Rong Tao; Tian-Tian Cui; Shigeki Moriguchi; Kohji Fukunaga; Feng Han; Ying-Mei Lu
Journal:  CNS Neurosci Ther       Date:  2016-06-20       Impact factor: 5.243

4.  Gene Co-Expression Network Analysis Reveals the Correlation Patterns Among Genes in Euryhaline Adaptation of Crassostrea gigas.

Authors:  Xuelin Zhao; Hong Yu; Lingfeng Kong; Qi Li
Journal:  Mar Biotechnol (NY)       Date:  2016-10-04       Impact factor: 3.619

Review 5.  Molecular networks and the evolution of human cognitive specializations.

Authors:  Miles Fontenot; Genevieve Konopka
Journal:  Curr Opin Genet Dev       Date:  2014-09-15       Impact factor: 5.578

6.  Pervasive and opposing effects of Unpredictable Chronic Mild Stress (UCMS) on hippocampal gene expression in BALB/cJ and C57BL/6J mouse strains.

Authors:  Karim Malki; Yann S Mineur; Maria Grazia Tosto; James Campbell; Priya Karia; Irfan Jumabhoy; Frans Sluyter; Wim E Crusio; Leonard C Schalkwyk
Journal:  BMC Genomics       Date:  2015-04-03       Impact factor: 3.969

7.  Identification of genes and gene pathways associated with major depressive disorder by integrative brain analysis of rat and human prefrontal cortex transcriptomes.

Authors:  K Malki; O Pain; M G Tosto; E Du Rietz; L Carboni; L C Schalkwyk
Journal:  Transl Psychiatry       Date:  2015-03-03       Impact factor: 6.222

8.  Circuit-wide Transcriptional Profiling Reveals Brain Region-Specific Gene Networks Regulating Depression Susceptibility.

Authors:  Rosemary C Bagot; Hannah M Cates; Immanuel Purushothaman; Zachary S Lorsch; Deena M Walker; Junshi Wang; Xiaojie Huang; Oliver M Schlüter; Ian Maze; Catherine J Peña; Elizabeth A Heller; Orna Issler; Minghui Wang; Won-Min Song; Jason L Stein; Xiaochuan Liu; Marie A Doyle; Kimberly N Scobie; Hao Sheng Sun; Rachael L Neve; Daniel Geschwind; Yan Dong; Li Shen; Bin Zhang; Eric J Nestler
Journal:  Neuron       Date:  2016-05-12       Impact factor: 17.173

9.  Complement C7 is Specifically Expressed in Mesangial Cells and is a Potential Diagnostic Biomarker for Diabetic Nephropathy and is Regulated by miR-494-3p and miR-574-5p.

Authors:  Hang Guo; Zhiyue Yan; Yonghui Hu; Xitong Huang; Congqing Pan
Journal:  Diabetes Metab Syndr Obes       Date:  2021-07-05       Impact factor: 3.168

10.  The endogenous and reactive depression subtypes revisited: integrative animal and human studies implicate multiple distinct molecular mechanisms underlying major depressive disorder.

Authors:  Karim Malki; Robert Keers; Maria Grazia Tosto; Anbarasu Lourdusamy; Lucia Carboni; Enrico Domenici; Rudolf Uher; Peter McGuffin; Leonard C Schalkwyk
Journal:  BMC Med       Date:  2014-05-07       Impact factor: 8.775

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