Literature DB >> 24273659

The Identification of Pompe Disease Mutations in Archival Tissues and Development of a Rapid Molecular-based Test.

Aliya Alansari1, Samira Al-Rawahi, Taher Ba-Omar, Mariam Al-Nabhani, Anand Date.   

Abstract

OBJECTIVES: Pompe disease (glycogen storage disease type II) is a rare autosomal recessive lysosomal storage disease that is caused by acid alpha-glucosidase deficiency. Early enzyme replacement therapy can benefit infants with the disease but the diagnosis is complicated by the rarity of the disease and the heterogeneity of the clinical manifestations. In this study, DNA extracted from archival postmortem formalin-fixed paraffin-embedded tissues was used to identify Pompe disease mutations in Oman and develop a rapid molecular-based test.
METHODS: Intronic primers were designed to amplify short fragments (193-454 base pairs [bp]) from coding exons (2-20) and screen for mutations using direct sequencing (DS).
RESULTS: Two mutations known to cause severe disease were identified in two samples. One was a coding mutation, c.2560C>T (p.Arg854X), and the second was found at a splice acceptor site, c.1327-2A>G. Polymerase chain reaction- and restriction fragment length polymorphism-based tests were designed for the rapid genotyping of the identified mutations.
CONCLUSION: These tests can facilitate prenatal diagnosis and help in identifying carriers in families with the identified mutations.

Entities:  

Keywords:  Genotyping Techniques; Glucan 1,4-alpha-Glucosidase; Mutations; Oman; Pompe Disease; Tissue

Year:  2013        PMID: 24273659      PMCID: PMC3836638          DOI: 10.12816/0003308

Source DB:  PubMed          Journal:  Sultan Qaboos Univ Med J        ISSN: 2075-051X


  13 in total

1.  Update of the pompe disease mutation database with 60 novel GAA sequence variants and additional studies on the functional effect of 34 previously reported variants.

Authors:  Marian Kroos; Marianne Hoogeveen-Westerveld; Helen Michelakakis; Robert Pomponio; Ans Van der Ploeg; Dicky Halley; Arnold Reuser
Journal:  Hum Mutat       Date:  2012-05-29       Impact factor: 4.878

2.  Clinical characteristics of neonates with inborn errors of metabolism detected by Tandem MS analysis in Oman.

Authors:  Surendra Nath Joshi; Poothirikovil Venugopalan
Journal:  Brain Dev       Date:  2007-02-20       Impact factor: 1.961

3.  How to describe the clinical spectrum in Pompe disease?

Authors:  Deniz Güngör; Arnold J J Reuser
Journal:  Am J Med Genet A       Date:  2013-01-08       Impact factor: 2.802

4.  Response to the letter "How to describe the clinical spectrum in Pompe disease?".

Authors:  Alexandra A Beckemeyer; Nancy J Mendelsohn; Priya S Kishnani
Journal:  Am J Med Genet A       Date:  2013-01-14       Impact factor: 2.802

Review 5.  Acid alpha-glucosidase deficiency (glycogenosis type II, Pompe disease).

Authors:  Nina Raben; Paul Plotz; Barry J Byrne
Journal:  Curr Mol Med       Date:  2002-03       Impact factor: 2.222

6.  Pompe disease in infants: improving the prognosis by newborn screening and early treatment.

Authors:  Yin-Hsiu Chien; Ni-Chung Lee; Beth L Thurberg; Shu-Chuan Chiang; Xiaokui Kate Zhang; Joan Keutzer; Ai-Chu Huang; Mei-Hwan Wu; Pei-Hsin Huang; Fuu-Jen Tsai; Yuan-Tsong Chen; Wuh-Liang Hwu
Journal:  Pediatrics       Date:  2009-12       Impact factor: 7.124

7.  Update of the Pompe disease mutation database with 107 sequence variants and a format for severity rating.

Authors:  Marian Kroos; Robert J Pomponio; Laura van Vliet; Rachel E Palmer; Michael Phipps; Robert Van der Helm; Dicky Halley; Arnold Reuser
Journal:  Hum Mutat       Date:  2008-06       Impact factor: 4.878

8.  Rapid diagnostic testing procedures for lysosomal storage disorders: alpha-glucosidase and beta-galactosidase assays on dried blood spots.

Authors:  Nicoletta Gasparotto; Rosella Tomanin; Anna Chiara Frigo; Gabriela Niizawa; Elisabetta Pasquini; Mariana Blanco; Maria Alice Donati; Joan Keutzer; Franco Zacchello; Maurizio Scarpa
Journal:  Clin Chim Acta       Date:  2008-12-13       Impact factor: 3.786

9.  Twenty-two novel mutations in the lysosomal alpha-glucosidase gene (GAA) underscore the genotype-phenotype correlation in glycogen storage disease type II.

Authors:  Monique M P Hermans; Dik van Leenen; Marian A Kroos; Clare E Beesley; Ans T Van Der Ploeg; Hitoshi Sakuraba; Ron Wevers; Wim Kleijer; Helen Michelakakis; Edwin P Kirk; Janice Fletcher; Nils Bosshard; Lina Basel-Vanagaite; Guy Besley; Arnold J J Reuser
Journal:  Hum Mutat       Date:  2004-01       Impact factor: 4.878

10.  Pompe disease diagnosis and management guideline.

Authors:  Priya S Kishnani; Robert D Steiner; Deeksha Bali; Kenneth Berger; Barry J Byrne; Laura E Case; Laura Case; John F Crowley; Steven Downs; R Rodney Howell; Richard M Kravitz; Joanne Mackey; Deborah Marsden; Anna Maria Martins; David S Millington; Marc Nicolino; Gwen O'Grady; Marc C Patterson; David M Rapoport; Alfred Slonim; Carolyn T Spencer; Cynthia J Tifft; Michael S Watson
Journal:  Genet Med       Date:  2006-05       Impact factor: 8.822

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  2 in total

1.  Diagnostic Screening Workflow for Mutations in the BRCA1 and BRCA2 Genes.

Authors:  Stella Lai; Clare Brookes; Debra O Prosser; Chuan-Ching Lan; Elaine Doherty; Donald R Love
Journal:  Sultan Qaboos Univ Med J       Date:  2015-01-21

2.  Classic infantile-onset Pompe disease with histopathological neurologic findings linked to a novel GAA gene 4 bp deletion: A case study.

Authors:  Magdalena Cerón-Rodríguez; Daniela Castillo-García; Carlos-Patricio Acosta-Rodríguez-Bueno; Jesús Aguirre-Hernández; Juan-Rafael Murillo-Eliosa; Pedro Valencia-Mayoral; Argelia Escobar-Sánchez; Juan-Luis Salgado-Loza
Journal:  Mol Genet Genomic Med       Date:  2022-05-09       Impact factor: 2.473

  2 in total

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