Literature DB >> 24267884

Extracting insight from noisy cellular networks.

Christian R Landry1, Emmanuel D Levy, Diala Abd Rabbo, Kirill Tarassov, Stephen W Michnick.   

Abstract

Network biologists attempt to extract meaningful relationships among genes or their products from very noisy data. We argue that what we categorize as noisy data may sometimes reflect noisy biology and therefore may shield a hidden meaning about how networks evolve and how matter is organized in the cell. We present practical solutions, based on existing evolutionary and biophysical concepts, through which our understanding of cell biology can be enormously enriched.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 24267884     DOI: 10.1016/j.cell.2013.11.003

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  17 in total

1.  Systematic identification of signal integration by protein kinase A.

Authors:  Marie Filteau; Guillaume Diss; Francisco Torres-Quiroz; Alexandre K Dubé; Andrea Schraffl; Verena A Bachmann; Isabelle Gagnon-Arsenault; Andrée-Ève Chrétien; Anne-Lise Steunou; Ugo Dionne; Jacques Côté; Nicolas Bisson; Eduard Stefan; Christian R Landry
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-23       Impact factor: 11.205

2.  Evolution of domain-peptide interactions to coadapt specificity and affinity to functional diversity.

Authors:  Abdellali Kelil; Emmanuel D Levy; Stephen W Michnick
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-17       Impact factor: 11.205

3.  Extended Linkers Improve the Detection of Protein-protein Interactions (PPIs) by Dihydrofolate Reductase Protein-fragment Complementation Assay (DHFR PCA) in Living Cells.

Authors:  Andrée-Ève Chrétien; Isabelle Gagnon-Arsenault; Alexandre K Dubé; Xavier Barbeau; Philippe C Després; Claudine Lamothe; Anne-Marie Dion-Côté; Patrick Lagüe; Christian R Landry
Journal:  Mol Cell Proteomics       Date:  2017-12-04       Impact factor: 5.911

4.  Bacterial Interactomes: Interacting Protein Partners Share Similar Function and Are Validated in Independent Assays More Frequently Than Previously Reported.

Authors:  Maxim Shatsky; Simon Allen; Barbara L Gold; Nancy L Liu; Thomas R Juba; Sonia A Reveco; Dwayne A Elias; Ramadevi Prathapam; Jennifer He; Wenhong Yang; Evelin D Szakal; Haichuan Liu; Mary E Singer; Jil T Geller; Bonita R Lam; Avneesh Saini; Valentine V Trotter; Steven C Hall; Susan J Fisher; Steven E Brenner; Swapnil R Chhabra; Terry C Hazen; Judy D Wall; H Ewa Witkowska; Mark D Biggin; John-Marc Chandonia; Gareth Butland
Journal:  Mol Cell Proteomics       Date:  2016-02-12       Impact factor: 5.911

5.  The role of structural pleiotropy and regulatory evolution in the retention of heteromers of paralogs.

Authors:  Axelle Marchant; Angel F Cisneros; Alexandre K Dubé; Isabelle Gagnon-Arsenault; Diana Ascencio; Honey Jain; Simon Aubé; Chris Eberlein; Daniel Evans-Yamamoto; Nozomu Yachie; Christian R Landry
Journal:  Elife       Date:  2019-08-27       Impact factor: 8.140

6.  A Philosophical Perspective on Evolutionary Systems Biology.

Authors:  Maureen A O'Malley; Orkun S Soyer; Mark L Siegal
Journal:  Biol Theory       Date:  2015-03-01

Review 7.  Proteome-Scale Human Interactomics.

Authors:  Katja Luck; Gloria M Sheynkman; Ivy Zhang; Marc Vidal
Journal:  Trends Biochem Sci       Date:  2017-03-08       Impact factor: 13.807

8.  Genome-wide protein-protein interaction screening by protein-fragment complementation assay (PCA) in living cells.

Authors:  Samuel Rochette; Guillaume Diss; Marie Filteau; Jean-Baptiste Leducq; Alexandre K Dubé; Christian R Landry
Journal:  J Vis Exp       Date:  2015-03-03       Impact factor: 1.355

Review 9.  Integrating phosphoproteomics in systems biology.

Authors:  Yu Liu; Mark R Chance
Journal:  Comput Struct Biotechnol J       Date:  2014-08-01       Impact factor: 7.271

10.  Inhibitory activities of short linear motifs underlie Hox interactome specificity in vivo.

Authors:  Manon Baëza; Séverine Viala; Marjorie Heim; Amélie Dard; Bruno Hudry; Marilyne Duffraisse; Ana Rogulja-Ortmann; Christine Brun; Samir Merabet
Journal:  Elife       Date:  2015-04-14       Impact factor: 8.140

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