Literature DB >> 24265153

The genetic landscape of clinical resistance to RAF inhibition in metastatic melanoma.

Eliezer M Van Allen1, Nikhil Wagle, Antje Sucker, Daniel J Treacy, Cory M Johannessen, Eva M Goetz, Chelsea S Place, Amaro Taylor-Weiner, Steven Whittaker, Gregory V Kryukov, Eran Hodis, Mara Rosenberg, Aaron McKenna, Kristian Cibulskis, Deborah Farlow, Lisa Zimmer, Uwe Hillen, Ralf Gutzmer, Simone M Goldinger, Selma Ugurel, Helen J Gogas, Friederike Egberts, Carola Berking, Uwe Trefzer, Carmen Loquai, Benjamin Weide, Jessica C Hassel, Stacey B Gabriel, Scott L Carter, Gad Getz, Levi A Garraway, Dirk Schadendorf.   

Abstract

Most patients with BRAF(V600)-mutant metastatic melanoma develop resistance to selective RAF kinase inhibitors. The spectrum of clinical genetic resistance mechanisms to RAF inhibitors and options for salvage therapy are incompletely understood. We performed whole-exome sequencing on formalin-fixed, paraffin-embedded tumors from 45 patients with BRAF(V600)-mutant metastatic melanoma who received vemurafenib or dabrafenib monotherapy. Genetic alterations in known or putative RAF inhibitor resistance genes were observed in 23 of 45 patients (51%). Besides previously characterized alterations, we discovered a "long tail" of new mitogen-activated protein kinase (MAPK) pathway alterations (MAP2K2, MITF) that confer RAF inhibitor resistance. In three cases, multiple resistance gene alterations were observed within the same tumor biopsy. Overall, RAF inhibitor therapy leads to diverse clinical genetic resistance mechanisms, mostly involving MAPK pathway reactivation. Novel therapeutic combinations may be needed to achieve durable clinical control of BRAF(V600)-mutant melanoma. Integrating clinical genomics with preclinical screens may model subsequent resistance studies.

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Year:  2013        PMID: 24265153      PMCID: PMC3947264          DOI: 10.1158/2159-8290.CD-13-0617

Source DB:  PubMed          Journal:  Cancer Discov        ISSN: 2159-8274            Impact factor:   39.397


  49 in total

1.  Role and therapeutic potential of PI3K-mTOR signaling in de novo resistance to BRAF inhibition.

Authors:  W Deng; Y N Vashisht Gopal; A Scott; G Chen; S E Woodman; M A Davies
Journal:  Pigment Cell Melanoma Res       Date:  2012-01-12       Impact factor: 4.693

2.  ContEst: estimating cross-contamination of human samples in next-generation sequencing data.

Authors:  Kristian Cibulskis; Aaron McKenna; Tim Fennell; Eric Banks; Mark DePristo; Gad Getz
Journal:  Bioinformatics       Date:  2011-07-29       Impact factor: 6.937

3.  Combinations of BRAF, MEK, and PI3K/mTOR inhibitors overcome acquired resistance to the BRAF inhibitor GSK2118436 dabrafenib, mediated by NRAS or MEK mutations.

Authors:  James G Greger; Stephen D Eastman; Vivian Zhang; Maureen R Bleam; Ashley M Hughes; Kimberly N Smitheman; Scott H Dickerson; Sylvie G Laquerre; Li Liu; Tona M Gilmer
Journal:  Mol Cancer Ther       Date:  2012-03-02       Impact factor: 6.261

4.  A comprehensive functional analysis of PTEN mutations: implications in tumor- and autism-related syndromes.

Authors:  Isabel Rodríguez-Escudero; María D Oliver; Amparo Andrés-Pons; María Molina; Víctor J Cid; Rafael Pulido
Journal:  Hum Mol Genet       Date:  2011-08-09       Impact factor: 6.150

5.  Intermittent administration of MEK inhibitor GDC-0973 plus PI3K inhibitor GDC-0941 triggers robust apoptosis and tumor growth inhibition.

Authors:  Klaus P Hoeflich; Mark Merchant; Christine Orr; Jocelyn Chan; Doug Den Otter; Leanne Berry; Ian Kasman; Hartmut Koeppen; Ken Rice; Nai-Ying Yang; Stefan Engst; Stuart Johnston; Lori S Friedman; Marcia Belvin
Journal:  Cancer Res       Date:  2011-11-14       Impact factor: 12.701

6.  Survival in BRAF V600-mutant advanced melanoma treated with vemurafenib.

Authors:  Jeffrey A Sosman; Kevin B Kim; Lynn Schuchter; Rene Gonzalez; Anna C Pavlick; Jeffrey S Weber; Grant A McArthur; Thomas E Hutson; Stergios J Moschos; Keith T Flaherty; Peter Hersey; Richard Kefford; Donald Lawrence; Igor Puzanov; Karl D Lewis; Ravi K Amaravadi; Bartosz Chmielowski; H Jeffrey Lawrence; Yu Shyr; Fei Ye; Jiang Li; Keith B Nolop; Richard J Lee; Andrew K Joe; Antoni Ribas
Journal:  N Engl J Med       Date:  2012-02-23       Impact factor: 91.245

7.  Concurrent loss of the PTEN and RB1 tumor suppressors attenuates RAF dependence in melanomas harboring (V600E)BRAF.

Authors:  F Xing; Y Persaud; C A Pratilas; B S Taylor; M Janakiraman; Q-B She; H Gallardo; C Liu; T Merghoub; B Hefter; I Dolgalev; A Viale; A Heguy; E De Stanchina; D Cobrinik; G Bollag; J Wolchok; A Houghton; D B Solit
Journal:  Oncogene       Date:  2011-07-04       Impact factor: 9.867

8.  Melanoma whole-exome sequencing identifies (V600E)B-RAF amplification-mediated acquired B-RAF inhibitor resistance.

Authors:  Hubing Shi; Gatien Moriceau; Xiangju Kong; Mi-Kyung Lee; Hane Lee; Richard C Koya; Charles Ng; Thinle Chodon; Richard A Scolyer; Kimberly B Dahlman; Jeffrey A Sosman; Richard F Kefford; Georgina V Long; Stanley F Nelson; Antoni Ribas; Roger S Lo
Journal:  Nat Commun       Date:  2012-03-06       Impact factor: 14.919

9.  A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries.

Authors:  Sheila Fisher; Andrew Barry; Justin Abreu; Brian Minie; Jillian Nolan; Toni M Delorey; Geneva Young; Timothy J Fennell; Alexander Allen; Lauren Ambrogio; Aaron M Berlin; Brendan Blumenstiel; Kristian Cibulskis; Dennis Friedrich; Ryan Johnson; Frank Juhn; Brian Reilly; Ramy Shammas; John Stalker; Sean M Sykes; Jon Thompson; John Walsh; Andrew Zimmer; Zac Zwirko; Stacey Gabriel; Robert Nicol; Chad Nusbaum
Journal:  Genome Biol       Date:  2011-01-04       Impact factor: 13.583

10.  RAF inhibitor resistance is mediated by dimerization of aberrantly spliced BRAF(V600E).

Authors:  Poulikos I Poulikakos; Yogindra Persaud; Manickam Janakiraman; Xiangju Kong; Charles Ng; Gatien Moriceau; Hubing Shi; Mohammad Atefi; Bjoern Titz; May Tal Gabay; Maayan Salton; Kimberly B Dahlman; Madhavi Tadi; Jennifer A Wargo; Keith T Flaherty; Mark C Kelley; Tom Misteli; Paul B Chapman; Jeffrey A Sosman; Thomas G Graeber; Antoni Ribas; Roger S Lo; Neal Rosen; David B Solit
Journal:  Nature       Date:  2011-11-23       Impact factor: 49.962

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  376 in total

Review 1.  Targeting Signaling Transduction Pathways in Bladder Cancer.

Authors:  Phillip H Abbosh; David J McConkey; Elizabeth R Plimack
Journal:  Curr Oncol Rep       Date:  2015-12       Impact factor: 5.075

Review 2.  Recent advances in the treatment of melanoma with BRAF and MEK inhibitors.

Authors:  Eva Muñoz-Couselo; Jesús Soberino García; José Manuel Pérez-García; Vanesa Ortega Cebrián; Javier Cortés Castán
Journal:  Ann Transl Med       Date:  2015-09

3.  Inhibition of oncogenic BRAF activity by indole-3-carbinol disrupts microphthalmia-associated transcription factor expression and arrests melanoma cell proliferation.

Authors:  Aishwarya Kundu; Jeanne G Quirit; Michelle G Khouri; Gary L Firestone
Journal:  Mol Carcinog       Date:  2016-02-15       Impact factor: 4.784

4.  Non-genomic and Immune Evolution of Melanoma Acquiring MAPKi Resistance.

Authors:  Willy Hugo; Hubing Shi; Lu Sun; Marco Piva; Chunying Song; Xiangju Kong; Gatien Moriceau; Aayoung Hong; Kimberly B Dahlman; Douglas B Johnson; Jeffrey A Sosman; Antoni Ribas; Roger S Lo
Journal:  Cell       Date:  2015-09-10       Impact factor: 41.582

Review 5.  RAS-targeted therapies: is the undruggable drugged?

Authors:  Amanda R Moore; Scott C Rosenberg; Frank McCormick; Shiva Malek
Journal:  Nat Rev Drug Discov       Date:  2020-06-11       Impact factor: 84.694

6.  Modeling Genomic Instability and Selection Pressure in a Mouse Model of Melanoma.

Authors:  Lawrence N Kwong; Lihua Zou; Sharmeen Chagani; Chandra Sekhar Pedamallu; Mingguang Liu; Shan Jiang; Alexei Protopopov; Jianhua Zhang; Gad Getz; Lynda Chin
Journal:  Cell Rep       Date:  2017-05-16       Impact factor: 9.423

7.  Recurrent Tumor Cell-Intrinsic and -Extrinsic Alterations during MAPKi-Induced Melanoma Regression and Early Adaptation.

Authors:  Chunying Song; Marco Piva; Lu Sun; Aayoung Hong; Gatien Moriceau; Xiangju Kong; Hong Zhang; Shirley Lomeli; Jin Qian; Clarissa C Yu; Robert Damoiseaux; Mark C Kelley; Kimberley B Dahlman; Philip O Scumpia; Jeffrey A Sosman; Douglas B Johnson; Antoni Ribas; Willy Hugo; Roger S Lo
Journal:  Cancer Discov       Date:  2017-09-01       Impact factor: 39.397

8.  A melanoma cell state distinction influences sensitivity to MAPK pathway inhibitors.

Authors:  David J Konieczkowski; Cory M Johannessen; Omar Abudayyeh; Jong Wook Kim; Zachary A Cooper; Adriano Piris; Dennie T Frederick; Michal Barzily-Rokni; Ravid Straussman; Rizwan Haq; David E Fisher; Jill P Mesirov; William C Hahn; Keith T Flaherty; Jennifer A Wargo; Pablo Tamayo; Levi A Garraway
Journal:  Cancer Discov       Date:  2014-04-25       Impact factor: 39.397

9.  Comparative safety of BRAF and MEK inhibitors (vemurafenib, dabrafenib and trametinib) in first-line therapy for BRAF-mutated metastatic melanoma.

Authors:  Ana Cebollero; Teresa Puértolas; Isabel Pajares; Lourdes Calera; Antonio Antón
Journal:  Mol Clin Oncol       Date:  2016-08-04

Review 10.  Roles for MDC1 in cancer development and treatment.

Authors:  Sophie E Ruff; Susan K Logan; Michael J Garabedian; Tony T Huang
Journal:  DNA Repair (Amst)       Date:  2020-08-11
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