Literature DB >> 24264958

Excitation of nucleobases from a computational perspective I: reaction paths.

Angelo Giussani1, Javier Segarra-Martí, Daniel Roca-Sanjuán, Manuela Merchán.   

Abstract

The main intrinsic photochemical events in nucleobases can be described on theoretical grounds within the realm of non-adiabatic computational photochemistry. From a static standpoint, the photochemical reaction path approach (PRPA), through the computation of the respective minimum energy path (MEP), can be regarded as the most suitable strategy in order to explore the electronically excited isolated nucleobases. Unfortunately, the PRPA does not appear widely in the studies reported in the last decade. The main ultrafast decay observed experimentally for the gas-phase excited nucleobases is related to the computed barrierless MEPs from the bright excited state connecting the initial Franck-Condon region and a conical intersection involving the ground state. At the highest level of theory currently available (CASPT2//CASPT2), the lowest excited (1)(ππ*) hypersurface for cytosine has a shallow minimum along the MEP deactivation pathway. In any case, the internal conversion processes in all the natural nucleobases are attained by means of interstate crossings, a self-protection mechanism that prevents the occurrence of photoinduced damage of nucleobases by ultraviolet radiation. Many alternative and secondary paths have been proposed in the literature, which ultimately provide a rich and constructive interplay between experimentally and theoretically oriented research.

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Year:  2015        PMID: 24264958     DOI: 10.1007/128_2013_501

Source DB:  PubMed          Journal:  Top Curr Chem        ISSN: 0340-1022


  7 in total

1.  Photophysical properties of pyrrolocytosine, a cytosine fluorescent base analogue.

Authors:  Quynh L Nguyen; Vincent A Spata; Spiridoula Matsika
Journal:  Phys Chem Chem Phys       Date:  2016-07-27       Impact factor: 3.676

2.  Deciphering the photochemical mechanisms describing the UV-induced processes occurring in solvated guanine monophosphate.

Authors:  Salvatore F Altavilla; Javier Segarra-Martí; Artur Nenov; Irene Conti; Ivan Rivalta; Marco Garavelli
Journal:  Front Chem       Date:  2015-04-20       Impact factor: 5.221

3.  How Does Thymine DNA Survive Ultrafast Dimerization Damage?

Authors:  Hongjuan Wang; Xuebo Chen
Journal:  Molecules       Date:  2016-12-31       Impact factor: 4.411

4.  On the Photostability of Cyanuric Acid and Its Candidature as a Prebiotic Nucleobase.

Authors:  Luis A Ortiz-Rodríguez; Sean J Hoehn; Carlos E Crespo-Hernández
Journal:  Molecules       Date:  2022-02-10       Impact factor: 4.411

5.  The Excited State Dynamics of a Mutagenic Cytidine Etheno Adduct Investigated by Combining Time-Resolved Spectroscopy and Quantum Mechanical Calculations.

Authors:  Paloma Lizondo-Aranda; Lara Martínez-Fernández; Miguel A Miranda; Roberto Improta; Thomas Gustavsson; Virginie Lhiaubet-Vallet
Journal:  J Phys Chem Lett       Date:  2021-12-30       Impact factor: 6.888

6.  Electronic and structural elements that regulate the excited-state dynamics in purine nucleobase derivatives.

Authors:  Carlos E Crespo-Hernández; Lara Martínez-Fernández; Clemens Rauer; Christian Reichardt; Sebastian Mai; Marvin Pollum; Philipp Marquetand; Leticia González; Inés Corral
Journal:  J Am Chem Soc       Date:  2015-03-25       Impact factor: 15.419

7.  Dynamics of the excited-state hydrogen transfer in a (dG)·(dC) homopolymer: intrinsic photostability of DNA.

Authors:  Antonio Francés-Monerris; Hugo Gattuso; Daniel Roca-Sanjuán; Iñaki Tuñón; Marco Marazzi; Elise Dumont; Antonio Monari
Journal:  Chem Sci       Date:  2018-09-18       Impact factor: 9.825

  7 in total

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