Literature DB >> 24259709

Contributions of intrinsic mutation rate and selfish selection to levels of de novo HRAS mutations in the paternal germline.

Eleni Giannoulatou1, Gilean McVean, Indira B Taylor, Simon J McGowan, Geoffrey J Maher, Zamin Iqbal, Susanne P Pfeifer, Isaac Turner, Emma M M Burkitt Wright, Jennifer Shorto, Aysha Itani, Karen Turner, Lorna Gregory, David Buck, Ewa Rajpert-De Meyts, Leendert H J Looijenga, Bronwyn Kerr, Andrew O M Wilkie, Anne Goriely.   

Abstract

The RAS proto-oncogene Harvey rat sarcoma viral oncogene homolog (HRAS) encodes a small GTPase that transduces signals from cell surface receptors to intracellular effectors to control cellular behavior. Although somatic HRAS mutations have been described in many cancers, germline mutations cause Costello syndrome (CS), a congenital disorder associated with predisposition to malignancy. Based on the epidemiology of CS and the occurrence of HRAS mutations in spermatocytic seminoma, we proposed that activating HRAS mutations become enriched in sperm through a process akin to tumorigenesis, termed selfish spermatogonial selection. To test this hypothesis, we quantified the levels, in blood and sperm samples, of HRAS mutations at the p.G12 codon and compared the results to changes at the p.A11 codon, at which activating mutations do not occur. The data strongly support the role of selection in determining HRAS mutation levels in sperm, and hence the occurrence of CS, but we also found differences from the mutation pattern in tumorigenesis. First, the relative prevalence of mutations in sperm correlates weakly with their in vitro activating properties and occurrence in cancers. Second, specific tandem base substitutions (predominantly GC>TT/AA) occur in sperm but not in cancers; genomewide analysis showed that this same mutation is also overrepresented in constitutional pathogenic and polymorphic variants, suggesting a heightened vulnerability to these mutations in the germline. We developed a statistical model to show how both intrinsic mutation rate and selfish selection contribute to the mutational burden borne by the paternal germline.

Entities:  

Keywords:  RASopathy; male mutation bias; paternal age effect; testis

Mesh:

Substances:

Year:  2013        PMID: 24259709      PMCID: PMC3864328          DOI: 10.1073/pnas.1311381110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  44 in total

1.  Pervasive multinucleotide mutational events in eukaryotes.

Authors:  Daniel R Schrider; Jonathan N Hourmozdi; Matthew W Hahn
Journal:  Curr Biol       Date:  2011-06-21       Impact factor: 10.834

2.  Two cases with severe lethal course of Costello syndrome associated with HRAS p.G12C and p.G12D.

Authors:  Sybille Lorenz; Christine Petersen; Ulrike Kordaß; Heide Seidel; Martin Zenker; Kerstin Kutsche
Journal:  Eur J Med Genet       Date:  2012-08-07       Impact factor: 2.708

3.  Mouse germ line stem cells undergo rapid and stochastic turnover.

Authors:  Allon M Klein; Toshinori Nakagawa; Rie Ichikawa; Shosei Yoshida; Benjamin D Simons
Journal:  Cell Stem Cell       Date:  2010-08-06       Impact factor: 24.633

Review 4.  Paternal age effect mutations and selfish spermatogonial selection: causes and consequences for human disease.

Authors:  Anne Goriely; Andrew O M Wilkie
Journal:  Am J Hum Genet       Date:  2012-02-10       Impact factor: 11.025

5.  Selfish spermatogonial selection: evidence from an immunohistochemical screen in testes of elderly men.

Authors:  Jasmine Lim; Geoffrey J Maher; Gareth D H Turner; Wioleta Dudka-Ruszkowska; Stephen Taylor; Ewa Rajpert-De Meyts; Anne Goriely; Andrew O M Wilkie
Journal:  PLoS One       Date:  2012-08-06       Impact factor: 3.240

6.  De novo assembly and genotyping of variants using colored de Bruijn graphs.

Authors:  Zamin Iqbal; Mario Caccamo; Isaac Turner; Paul Flicek; Gil McVean
Journal:  Nat Genet       Date:  2012-01-08       Impact factor: 38.330

7.  Positive selection for new disease mutations in the human germline: evidence from the heritable cancer syndrome multiple endocrine neoplasia type 2B.

Authors:  Soo-Kyung Choi; Song-Ro Yoon; Peter Calabrese; Norman Arnheim
Journal:  PLoS Genet       Date:  2012-02-16       Impact factor: 5.917

8.  Neonatal lethal Costello syndrome and unusual dinucleotide deletion/insertion mutations in HRAS predicting p.Gly12Val.

Authors:  Emma M M Burkitt-Wright; Lisa Bradley; Jennifer Shorto; Vivienne P M McConnell; Caroline Gannon; Helen V Firth; Soo-Mi Park; Angela D'Amore; Paul F Munyard; Peter D Turnpenny; Amanda Charlton; Meredith Wilson; Bronwyn Kerr
Journal:  Am J Med Genet A       Date:  2012-04-11       Impact factor: 2.802

9.  An integrated map of genetic variation from 1,092 human genomes.

Authors:  Goncalo R Abecasis; Adam Auton; Lisa D Brooks; Mark A DePristo; Richard M Durbin; Robert E Handsaker; Hyun Min Kang; Gabor T Marth; Gil A McVean
Journal:  Nature       Date:  2012-11-01       Impact factor: 49.962

10.  Rate of de novo mutations and the importance of father's age to disease risk.

Authors:  Augustine Kong; Michael L Frigge; Gisli Masson; Soren Besenbacher; Patrick Sulem; Gisli Magnusson; Sigurjon A Gudjonsson; Asgeir Sigurdsson; Aslaug Jonasdottir; Adalbjorg Jonasdottir; Wendy S W Wong; Gunnar Sigurdsson; G Bragi Walters; Stacy Steinberg; Hannes Helgason; Gudmar Thorleifsson; Daniel F Gudbjartsson; Agnar Helgason; Olafur Th Magnusson; Unnur Thorsteinsdottir; Kari Stefansson
Journal:  Nature       Date:  2012-08-23       Impact factor: 49.962

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  31 in total

1.  Costello syndrome: Clinical phenotype, genotype, and management guidelines.

Authors:  Karen W Gripp; Lindsey A Morse; Marni Axelrad; Kathryn C Chatfield; Aaron Chidekel; William Dobyns; Daniel Doyle; Bronwyn Kerr; Angela E Lin; David D Schwartz; Barbara J Sibbles; Dawn Siegel; Suma P Shankar; David A Stevenson; Mihir M Thacker; K Nicole Weaver; Sue M White; Katherine A Rauen
Journal:  Am J Med Genet A       Date:  2019-06-20       Impact factor: 2.802

2.  Ultra-sensitive Sequencing Identifies High Prevalence of Clonal Hematopoiesis-Associated Mutations throughout Adult Life.

Authors:  Rocio Acuna-Hidalgo; Hilal Sengul; Marloes Steehouwer; Maartje van de Vorst; Sita H Vermeulen; Lambertus A L M Kiemeney; Joris A Veltman; Christian Gilissen; Alexander Hoischen
Journal:  Am J Hum Genet       Date:  2017-06-29       Impact factor: 11.025

3.  Hyperinsulinemic Hypoglycemia in a Patient with Costello Syndrome: An Etiology to Consider in Hypoglycemia.

Authors:  Dogus Vuralli; Can Kosukcu; Ekim Taskiran; Pelin Ozlem Simsek-Kiper; Gulen Eda Utine; Koray Boduroglu; Ayfer Alikasifoglu; Mehmet Alikasifoglu
Journal:  Mol Syndromol       Date:  2020-09-16

4.  Early-lethal Costello syndrome due to rare HRAS Tandem Base substitution (c.35_36GC>AA; p.G12E)-associated pulmonary vascular disease.

Authors:  K Nicole Weaver; Dehua Wang; James Cnota; Nicholas Gardner; Deborah Stabley; Katia Sol-Church; Karen W Gripp; David P Witte; Kevin E Bove; Robert J Hopkin
Journal:  Pediatr Dev Pathol       Date:  2014-08-18

5.  Phenotypic spectrum of Costello syndrome individuals harboring the rare HRAS mutation p.Gly13Asp.

Authors:  Débora Bertola; Michelle Buscarilli; Deborah L Stabley; Laura Baker; Daniel Doyle; Dennis W Bartholomew; Katia Sol-Church; Karen W Gripp
Journal:  Am J Med Genet A       Date:  2017-04-03       Impact factor: 2.802

6.  B56δ-related protein phosphatase 2A dysfunction identified in patients with intellectual disability.

Authors:  Gunnar Houge; Dorien Haesen; Lisenka E L M Vissers; Sarju Mehta; Michael J Parker; Michael Wright; Julie Vogt; Shane McKee; John L Tolmie; Nuno Cordeiro; Tjitske Kleefstra; Marjolein H Willemsen; Margot R F Reijnders; Siren Berland; Eli Hayman; Eli Lahat; Eva H Brilstra; Koen L I van Gassen; Evelien Zonneveld-Huijssoon; Charlotte I de Bie; Alexander Hoischen; Evan E Eichler; Rita Holdhus; Vidar M Steen; Stein Ove Døskeland; Matthew E Hurles; David R FitzPatrick; Veerle Janssens
Journal:  J Clin Invest       Date:  2015-07-13       Impact factor: 14.808

7.  PLCζ disruption with complete fertilization failure in normozoospermia.

Authors:  Mercè Durban; Montserrat Barragán; Marta Colodron; Minerva Ferrer-Buitrago; Petra De Sutter; Björn Heindryckx; Valérie Vernaeve; Rita Vassena
Journal:  J Assist Reprod Genet       Date:  2015-05-19       Impact factor: 3.412

8.  An attenuated phenotype of Costello syndrome in three unrelated individuals with a HRAS c.179G>A (p.Gly60Asp) mutation correlates with uncommon functional consequences.

Authors:  Karen W Gripp; Katia Sol-Church; Patroula Smpokou; Gail E Graham; David A Stevenson; Heather Hanson; David H Viskochil; Laura C Baker; Bridget Russo; Nick Gardner; Deborah L Stabley; Verena Kolbe; Georg Rosenberger
Journal:  Am J Med Genet A       Date:  2015-04-25       Impact factor: 2.802

9.  Paternal uniparental disomy 11p15.5 in the pancreatic nodule of an infant with Costello syndrome: Shared mechanism for hyperinsulinemic hypoglycemia in neonates with Costello and Beckwith-Wiedemann syndrome and somatic loss of heterozygosity in Costello syndrome driving clonal expansion.

Authors:  Karen W Gripp; Katherine M Robbins; Brandon S Sheffield; Anna F Lee; Millan S Patel; Stephen Yip; Daniel Doyle; Deborah Stabley; Katia Sol-Church
Journal:  Am J Med Genet A       Date:  2015-11-17       Impact factor: 2.802

Review 10.  Testicular cancer.

Authors:  Liang Cheng; Peter Albers; Daniel M Berney; Darren R Feldman; Gedske Daugaard; Timothy Gilligan; Leendert H J Looijenga
Journal:  Nat Rev Dis Primers       Date:  2018-10-05       Impact factor: 52.329

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