| Literature DB >> 24251114 |
Chantel N Jensen1, Sohail T Ali, Michael J Allen, Gideon Grogan.
Abstract
The flavoprotein monooxygenase (FPMO) from Stenotrophomonas maltophilia (SMFMO, Uniprot: B2FLR2) catalyses the asymmetric oxidation of thioethers and is unusual amongst FPMOs in its ability to use the non-phosphorylated cofactor NADH, as well as NADPH, for the reduction of the FAD coenzyme. In order to explore the basis for cofactor promiscuity, structure-guided mutation of two residues in the cofactor binding site, Gln193 and His194, in SMFMO were performed in an attempt to imitate the cofactor binding site of the NADPH-dependent FMO from Methylophaga aminisulfidivorans sp. SK1 (mFMO), in which structurally homologous residues Arg234 and Thr235 bind the NADPH 2'-ribose phosphate. Mutation of His194 to threonine proved most significant, with a switch in specificity from NADH to NADPH [(k cat/K m NADH)/k cat/K m NADPH) from 1.5:1 to 1:3.5, mostly as a result of a reduced K m for NADPH of approximately sevenfold in the His194Thr mutant. The structure of the Gln193Arg/His194Thr mutant revealed no substantial changes in the backbone of the enzyme or orientation of side chains resulting from mutation. Mutation of Phe52, in the vicinity of FAD, and which in mFMO is an asparagine thought to be responsible for flavin hydroperoxide stabilisation, is, in SMFMO, a determinant of enantioselectivity in sulfoxidation. Mutation of Phe52 to valine resulted in a mutant that transformed para-tolyl methyl sulfide into the (S)-sulfoxide with 32% e.e., compared to 25% (R)- for the wild type. These results shed further light both on the cofactor specificity of FPMOs, and their determinants of enantioselectivity, with a view to informing engineering studies of FPMOs in the future.Entities:
Keywords: Baeyer–Villiger monoxygenase; Biocatalyst; CHMO, cyclohexanone monooxygenase; Flavoprotein monoxygenase; NADPH; PAMO, phenylacetone monooxygenase; SMFMO, Stenotrophomonas maltophilia flavin monoxygenase; Sulfoxide; mFMO, flavin monooxygenase from Methylophaga aminisulfidivorans
Year: 2013 PMID: 24251114 PMCID: PMC3829993 DOI: 10.1016/j.fob.2013.09.008
Source DB: PubMed Journal: FEBS Open Bio ISSN: 2211-5463 Impact factor: 2.693
Fig. 1Asymmetric sulfoxidation reactions catalysed by flavoprotein monooxygenases (FPMOs). NAD(P)H is used to reduce the flavin prior to reaction with molecular oxygen, yielding (hydroperoxy)flavin intermediate, which is the oxidant in the reaction.
Fig. 2Superimposition of nicotinamide cofactor binding site in flavoprotein monooxygenase mFMO from Methylophaga aminisulfidivorans (2XLP, grey) and SMFMO (white), showing residues Gln193 and His194 in SMFMO targeted for mutation. The SMFMO structure was determined in the presence of sulfate ions, which bind in the phosphate site(s).
Kinetics of nicotinamide cofactor oxidation by SMFMO and mutants of Gln193 and His194.
| SMFMO variant | ||||||
|---|---|---|---|---|---|---|
| Wild-type | 23.7 ± 9.1 | 0.029 ± 0.003 | 1223 | 27.3 ± 5.3 | 0.022 ± 0.002 | 805 |
| Gln193Arg | 21.2 ± 4.3 | 0.031 ± 0.003 | 1476 | 8.3 ± 1.6 | 0.007 ± 0.0005 | 875 |
| His194Thr | 14.1 ± 2.9 | 0.012 ± 0.0008 | 857 | 4.2 ± 0.7 | 0.012 ± 0.0004 | 3000 |
| Gln193Arg/His194Thr | 12.8 ± 6.9 | 0.010 ± 0.002 | 769 | 4.1 ± 2.8 | 0.003 ± 0.0003 | 743 |
Fig. 3Superimposition of nicotinamide cofactor binding site in wild-type SMFMO (WT, white) and Gln193Arg/His194Thr double mutant (DM, grey). The r.m.s.d. between the wild-type structure and double mutant structure over 330 C-alpha atoms was 0.42 Å.
Fig. 4Superimposition of flavin-binding site of SMFMO (carbon atoms in white) with flavin-binding site of mFMO (carbon atoms in grey) in complex with the substrate indole (taken from PDB: 2XVJ; [13]) and illustrating sites chosen for mutation in SMFMO in order to investigate enantioselectivity in SMFMO.
Enantioselectivity of selected SMFMO mutants towards the substrates methyl-p-tolyl sulfide and ethyl phenyl sulphide.
| Variant | Absolute configuration and enantiomeric excess of sulfoxide product | |
|---|---|---|
| Methyl- | Ethyl phenyl sulfoxide product of biotransformation of ethyl phenyl sulfide | |
| Wild-type | ( | ( |
| Asn173Ser | ( | n.d. |
| Ser174Cys | ( | ( |
| Phe52Val | ( | Racemic |
| Phe52Arg | ( | n.d. |
| Phe52Leu | ( | ( |
n.d. = not determined.
Biotransformation of sulfides by Phe52Val mutant of SMFMO compared to biotransformations of equivalent substrates using the wild-type enzyme.
| Substrate | Absolute configuration and enantiomeric excess of sulfoxide product | |
|---|---|---|
| WT SMFMO | Phe52Val mutant | |
| ( | ( | |
| ( | ( | |
| ( | ( | |
| ( | ( | |
| ( | ( | |
| ( | ( | |
| ( | ( | |
PCR oligonucleotide primers used in this study.
| Mutant | Forward primer | Reverse primer |
|---|---|---|
| Q193R | GAAACGACTTGGATCACACGTCACGAGCCGGCCTTTCTGGC | GCCAGAAAGGCCGGCTCGTGACGTGTGATCCAAGTCGTTTC |
| H194T | GACTTGGATCACACAGACCGAGCCGGCCTTTCTGG | CCAGAAAGGCCGGCTCGGTCTGTGTGATCCAAGTC |
| N173X | GCAATTATCGGTGGCGGTNDTTCTGGCGCACAG | n/a |
| S174X | CGGTGGCGGTAATNDTGGCGCACAGATCCTGGC | n/a |
| F52X | GGCATTCTCTGCATCTGNDTAGCCCAGCGGGCTGG | n/a |
Data collection and refinement statistics for Q193R/H194T double mutant of SMFMO (figures in brackets correspond to data corresponding to the highest resolution shell).
| Q193R/H194T double mutant of SMFMO | |
|---|---|
| Beamline | Diamond I03 |
| Wavelength (Å) | 0.97630 |
| Resolution (Å) | 59.78–2.60 (2.65–2.60) |
| Space group | |
| Unit cell (Å) | |
| No. of molecules in the asymmetric unit | 8 |
| Unique reflections | 102,301 (6014) |
| Completeness ( %) | 97.8 (99.4) |
| 0.15 (0.56) | |
| 0.12 (0.44) | |
| Multiplicity | 4.8 (4.6) |
| 〈 | 4.6 (2.1) |
| CC1/2 | 0.99 (0.71) |
| Overall | 43 |
| 25.5/29.5 | |
| r.m.s.d 1–2 bonds (Å) | 0.011 |
| r.m.s.d 1–3 angles (o) | 1.675 |
| Avge main chain B (Å2) | 50 |
| Avge side chain B (Å2) | 51 |
| Avge water B (Å2) | 34 |