Literature DB >> 24249550

Artificial genetic sets composed of size-expanded base pairs.

Malte Winnacker1, Eric T Kool.   

Abstract

We describe in this Minireview the synthesis, properties, and applications of artificial genetic sets built from base pairs that are larger than the natural Watson-Crick architecture. Such designed systems are being explored by several research groups to investigate basic chemical questions regarding the functions of the genetic information storage systems and thus of the origin and evolution of life. For example, is the terrestrial DNA structure the only viable one, or can other architectures function as well? Working outside the constraints of purine-pyrimidine geometry provides more chemical flexibility in design, and the added size confers useful properties such as high binding affinity and helix stability as well as fluorescence. These features are useful for the investigation of fundamental biochemical questions as well as in the development of new biotechnological, biomedical, and nanostructural tools and methods.
Copyright © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  Watson-Crick base pairing; non-natural nucleobases; nucleic acids; replication; synthetic biology

Mesh:

Substances:

Year:  2013        PMID: 24249550      PMCID: PMC5497059          DOI: 10.1002/anie.201305267

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  67 in total

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Authors: 
Journal:  Angew Chem Int Ed Engl       Date:  2000-03       Impact factor: 15.336

2.  "Fleximers". Design and synthesis of two novel split nucleosides.

Authors:  K L Seley; L Zhang; A Hagos
Journal:  Org Lett       Date:  2001-10-04       Impact factor: 6.005

3.  How do size-expanded DNA nucleobases enhance duplex stability? Computational analysis of the hydrogen-bonding and stacking ability of xDNA bases.

Authors:  Tom L McConnell; Stacey D Wetmore
Journal:  J Phys Chem B       Date:  2007-02-28       Impact factor: 2.991

4.  DNA--metal base pairs.

Authors:  Guido H Clever; Corinna Kaul; Thomas Carell
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

5.  Polymerase amplification, cloning, and gene expression of benzo-homologous "yDNA" base pairs.

Authors:  Jijumon Chelliserrykattil; Haige Lu; Alex H F Lee; Eric T Kool
Journal:  Chembiochem       Date:  2008-12-15       Impact factor: 3.164

6.  An alternative nucleobase code: characterization of purine-purine DNA double helices bearing guanine-isoguanine and diaminopurine 7-deaza-xanthine base pairs.

Authors:  Benjamin D Heuberger; Christopher Switzer
Journal:  Chembiochem       Date:  2008-11-24       Impact factor: 3.164

7.  Size-expanded analogues of dG and dC: synthesis and pairing properties in DNA.

Authors:  Haibo Liu; Jianmin Gao; Eric T Kool
Journal:  J Org Chem       Date:  2005-01-21       Impact factor: 4.354

Review 8.  Redesigning the architecture of the base pair: toward biochemical and biological function of new genetic sets.

Authors:  Andrew T Krueger; Eric T Kool
Journal:  Chem Biol       Date:  2009-03-27

9.  Generation of high-affinity DNA aptamers using an expanded genetic alphabet.

Authors:  Michiko Kimoto; Rie Yamashige; Ken-ichiro Matsunaga; Shigeyuki Yokoyama; Ichiro Hirao
Journal:  Nat Biotechnol       Date:  2013-04-07       Impact factor: 54.908

10.  Hetero-expanded purine nucleosides. Design, synthesis and preliminary biological activity.

Authors:  Katherine L Seley-Radtke; Zhibo Zhang; Orrette R Wauchope; Sarah C Zimmermann; Alexander Ivanov; Brent Korba
Journal:  Nucleic Acids Symp Ser (Oxf)       Date:  2008
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  7 in total

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Review 3.  Alternative Watson-Crick Synthetic Genetic Systems.

Authors:  Steven A Benner; Nilesh B Karalkar; Shuichi Hoshika; Roberto Laos; Ryan W Shaw; Mariko Matsuura; Diego Fajardo; Patricia Moussatche
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-11-01       Impact factor: 10.005

Review 4.  Physics-based all-atom modeling of RNA energetics and structure.

Authors:  Louis G Smith; Jianbo Zhao; David H Mathews; Douglas H Turner
Journal:  Wiley Interdiscip Rev RNA       Date:  2017-09       Impact factor: 9.957

Review 5.  Synthetic biology approaches to biological containment: pre-emptively tackling potential risks.

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Journal:  Essays Biochem       Date:  2016-11-30       Impact factor: 8.000

6.  7-Iodo-5-aza-7-deazaguanine ribonucleoside: crystal structure, physical properties, base-pair stability and functionalization.

Authors:  Dasharath Kondhare; Simone Budow-Busse; Constantin Daniliuc; Frank Seela
Journal:  Acta Crystallogr C Struct Chem       Date:  2020-04-29       Impact factor: 1.172

7.  Thermodynamic and Kinetic Sequence Selection in Enzyme-Free Polymer Self-Assembly inside a Non-equilibrium RNA Reactor.

Authors:  Tobias Göppel; Joachim H Rosenberger; Bernhard Altaner; Ulrich Gerland
Journal:  Life (Basel)       Date:  2022-04-10
  7 in total

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