Literature DB >> 24243193

RNA extraction from developing or mature wheat seeds.

Agnelo Furtado1.   

Abstract

Cereal grains, as storage tissues of the plant, contain high amounts of starch. Purification of RNA from plant tissue especially from seed tissue can be challenging due to this high starch content. Starch coprecipitates with RNA in the presence of isopropanol or ethanol and can interfere with the extraction process and downstream reactions. Thus the removal of starch by using appropriate methods is necessary for obtaining pure RNA to be processed for functional genomics analysis. We describe a method to isolate large amount of good-quality RNA from developing and mature wheat grain which can also be adapted to other cereal grains.

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Year:  2014        PMID: 24243193     DOI: 10.1007/978-1-62703-715-0_4

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  15 in total

1.  Long-read sequencing of the coffee bean transcriptome reveals the diversity of full-length transcripts.

Authors:  Bing Cheng; Agnelo Furtado; Robert J Henry
Journal:  Gigascience       Date:  2017-11-01       Impact factor: 6.524

2.  Association of gene expression with biomass content and composition in sugarcane.

Authors:  Nam V Hoang; Agnelo Furtado; Angela J O'Keeffe; Frederik C Botha; Robert J Henry
Journal:  PLoS One       Date:  2017-08-17       Impact factor: 3.240

3.  A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing.

Authors:  Nam V Hoang; Agnelo Furtado; Patrick J Mason; Annelie Marquardt; Lakshmi Kasirajan; Prathima P Thirugnanasambandam; Frederik C Botha; Robert J Henry
Journal:  BMC Genomics       Date:  2017-05-22       Impact factor: 3.969

4.  Association of variation in the sugarcane transcriptome with sugar content.

Authors:  Prathima P Thirugnanasambandam; Nam V Hoang; Agnelo Furtado; Frederick C Botha; Robert J Henry
Journal:  BMC Genomics       Date:  2017-11-25       Impact factor: 3.969

5.  Phytoene synthase 1 (Psy-1) and lipoxygenase 1 (Lpx-1) Genes Influence on Semolina Yellowness in Wheat Mediterranean Germplasm.

Authors:  Roberto Parada; Conxita Royo; Agata Gadaleta; Pasqualina Colasuonno; Ilaria Marcotuli; Iván Matus; Dalma Castillo; Adriano Costa de Camargo; Jorge Araya-Flores; Dolors Villegas; Andrés R Schwember
Journal:  Int J Mol Sci       Date:  2020-06-30       Impact factor: 5.923

6.  The coffee bean transcriptome explains the accumulation of the major bean components through ripening.

Authors:  Bing Cheng; Agnelo Furtado; Robert J Henry
Journal:  Sci Rep       Date:  2018-07-30       Impact factor: 4.379

7.  The transcriptome of the developing grain: a resource for understanding seed development and the molecular control of the functional and nutritional properties of wheat.

Authors:  Parimalan Rangan; Agnelo Furtado; Robert J Henry
Journal:  BMC Genomics       Date:  2017-10-11       Impact factor: 3.969

8.  Fasciclin-like arabinogalactan protein gene expression is associated with yield of flour in the milling of wheat.

Authors:  Ravi C Nirmal; Agnelo Furtado; Parimalan Rangan; Robert J Henry
Journal:  Sci Rep       Date:  2017-10-02       Impact factor: 4.379

9.  Transcriptome analysis highlights key differentially expressed genes involved in cellulose and lignin biosynthesis of sugarcane genotypes varying in fiber content.

Authors:  Lakshmi Kasirajan; Nam V Hoang; Agnelo Furtado; Frederik C Botha; Robert J Henry
Journal:  Sci Rep       Date:  2018-08-02       Impact factor: 4.379

10.  Slower development of lower canopy beans produces better coffee.

Authors:  Bing Cheng; Heather E Smyth; Agnelo Furtado; Robert J Henry
Journal:  J Exp Bot       Date:  2020-07-06       Impact factor: 6.992

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