Literature DB >> 24243190

DNA extraction from vegetative tissue for next-generation sequencing.

Agnelo Furtado1.   

Abstract

The quality of extracted DNA is crucial for several applications in molecular biology. If the DNA is to be used for next-generation sequencing (NGS), then microgram quantities of good-quality DNA is required. In addition, the DNA must substantially be of high molecular weight so that it can be used for library preparation and NGS sequencing. Contaminating phenol or starch in the isolated DNA can be easily removed by filtration through kit-based cartridges. In this chapter we describe a simple two-reagent DNA extraction protocol which yields a high quality and quantity of DNA which can be used for different applications including NGS.

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Year:  2014        PMID: 24243190     DOI: 10.1007/978-1-62703-715-0_1

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  17 in total

1.  The jojoba genome reveals wide divergence of the sex chromosomes in a dioecious plant.

Authors:  Othman Al-Dossary; Bader Alsubaie; Ardashir Kharabian-Masouleh; Ibrahim Al-Mssallem; Agnelo Furtado; Robert J Henry
Journal:  Plant J       Date:  2021-10-08       Impact factor: 7.091

2.  Direct chloroplast sequencing: comparison of sequencing platforms and analysis tools for whole chloroplast barcoding.

Authors:  Marta Brozynska; Agnelo Furtado; Robert James Henry
Journal:  PLoS One       Date:  2014-10-17       Impact factor: 3.240

3.  A novel highly differentially expressed gene in wheat endosperm associated with bread quality.

Authors:  A Furtado; P C Bundock; P M Banks; G Fox; X Yin; R J Henry
Journal:  Sci Rep       Date:  2015-05-26       Impact factor: 4.379

4.  Influence of Gene Expression on Hardness in Wheat.

Authors:  Ravi C Nirmal; Agnelo Furtado; Colin Wrigley; Robert J Henry
Journal:  PLoS One       Date:  2016-10-14       Impact factor: 3.240

5.  Genome and transcriptome sequencing characterises the gene space of Macadamia integrifolia (Proteaceae).

Authors:  Catherine J Nock; Abdul Baten; Bronwyn J Barkla; Agnelo Furtado; Robert J Henry; Graham J King
Journal:  BMC Genomics       Date:  2016-11-17       Impact factor: 3.969

6.  Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice.

Authors:  Marta Brozynska; Dario Copetti; Agnelo Furtado; Rod A Wing; Darren Crayn; Glen Fox; Ryuji Ishikawa; Robert J Henry
Journal:  Plant Biotechnol J       Date:  2017-01-23       Impact factor: 9.803

7.  Relationships between Iraqi Rice Varieties at the Nuclear and Plastid Genome Levels.

Authors:  Hayba Badro; Agnelo Furtado; Robert Henry
Journal:  Plants (Basel)       Date:  2019-11-07

8.  Chloroplast Genome of Novel Rice Germplasm Identified in Northern Australia.

Authors:  Marta Brozynska; Ernnie Syafika Omar; Agnelo Furtado; Darren Crayn; Bryan Simon; Ryuji Ishikawa; Robert James Henry
Journal:  Trop Plant Biol       Date:  2014-10-30       Impact factor: 1.512

9.  Protocol: a simple method for extracting next-generation sequencing quality genomic DNA from recalcitrant plant species.

Authors:  Adam Healey; Agnelo Furtado; Tal Cooper; Robert J Henry
Journal:  Plant Methods       Date:  2014-06-27       Impact factor: 4.993

10.  Diversity and evolution of rice progenitors in Australia.

Authors:  Ali M Moner; Agnelo Furtado; Ian Chivers; Glen Fox; Darren Crayn; Robert J Henry
Journal:  Ecol Evol       Date:  2018-04-02       Impact factor: 2.912

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