Literature DB >> 24239985

Gene expression profile based classification models of psoriasis.

Pi Guo1, Youxi Luo2, Guoqin Mai2, Ming Zhang3, Guoqing Wang4, Miaomiao Zhao2, Liming Gao2, Fan Li5, Fengfeng Zhou6.   

Abstract

Psoriasis is an autoimmune disease, which symptoms can significantly impair the patient's life quality. It is mainly diagnosed through the visual inspection of the lesion skin by experienced dermatologists. Currently no cure for psoriasis is available due to limited knowledge about its pathogenesis and development mechanisms. Previous studies have profiled hundreds of differentially expressed genes related to psoriasis, however with no robust psoriasis prediction model available. This study integrated the knowledge of three feature selection algorithms that revealed 21 features belonging to 18 genes as candidate markers. The final psoriasis classification model was established using the novel Incremental Feature Selection algorithm that utilizes only 3 features from 2 unique genes, IGFL1 and C10orf99. This model has demonstrated highly stable prediction accuracy (averaged at 99.81%) over three independent validation strategies. The two marker genes, IGFL1 and C10orf99, were revealed as the upstream components of growth signal transduction pathway of psoriatic pathogenesis.
Copyright © 2013 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Classification; Gene expression profiles; Psoriasis

Mesh:

Substances:

Year:  2013        PMID: 24239985     DOI: 10.1016/j.ygeno.2013.11.001

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  32 in total

1.  Computational Systems Biology of Psoriasis: Are We Ready for the Age of Omics and Systems Biomarkers?

Authors:  Tuba Sevimoglu; Kazim Yalcin Arga
Journal:  OMICS       Date:  2015-10-19

2.  DNA methylation-based subclassification of psoriasis in the Chinese Han population.

Authors:  Fusheng Zhou; Changbing Shen; Yi-Hsiang Hsu; Jing Gao; Jinfa Dou; Randy Ko; Xiaodong Zheng; Liangdan Sun; Yong Cui; Xuejun Zhang
Journal:  Front Med       Date:  2018-04-05       Impact factor: 4.592

3.  Selecting Multiple Biomarker Subsets with Similarly Effective Binary Classification Performances.

Authors:  Xin Feng; Shaofei Wang; Quewang Liu; Han Li; Jiamei Liu; Cheng Xu; Weifeng Yang; Yayun Shu; Weiwei Zheng; Bingxin Yu; Mingran Qi; Wenyang Zhou; Fengfeng Zhou
Journal:  J Vis Exp       Date:  2018-10-11       Impact factor: 1.355

4.  Differentiation of clear cell and non-clear cell renal cell carcinomas by all-relevant radiomics features from multiphase CT: a VHL mutation perspective.

Authors:  Zhi-Cheng Li; Guangtao Zhai; Jinheng Zhang; Zhongqiu Wang; Guiqin Liu; Guang-Yu Wu; Dong Liang; Hairong Zheng
Journal:  Eur Radiol       Date:  2018-12-06       Impact factor: 5.315

5.  Multiregional radiomics features from multiparametric MRI for prediction of MGMT methylation status in glioblastoma multiforme: A multicentre study.

Authors:  Zhi-Cheng Li; Hongmin Bai; Qiuchang Sun; Qihua Li; Lei Liu; Yan Zou; Yinsheng Chen; Chaofeng Liang; Hairong Zheng
Journal:  Eur Radiol       Date:  2018-03-21       Impact factor: 5.315

6.  Deep learning-based microarray cancer classification and ensemble gene selection approach.

Authors:  Khosro Rezaee; Gwanggil Jeon; Mohammad R Khosravi; Hani H Attar; Alireza Sabzevari
Journal:  IET Syst Biol       Date:  2022-07-04       Impact factor: 1.468

7.  Immune changes beyond Th2 pathways during rapid multifood immunotherapy enabled with omalizumab.

Authors:  Monali Manohar; Diane Dunham; Sheena Gupta; Zheng Yan; Wenming Zhang; Samantha Minnicozzi; Matthew Kirkey; Bryan Bunning; Roshni Roy Chowdhury; Stephen J Galli; Scott D Boyd; Laurie Elizabeth Kost; R Sharon Chinthrajah; Manisha Desai; Hans C Oettgen; Holden T Maecker; Wong Yu; Rosemarie H DeKruyff; Sandra Andorf; Kari C Nadeau
Journal:  Allergy       Date:  2021-05-29       Impact factor: 14.710

8.  Constraint programming based biomarker optimization.

Authors:  Manli Zhou; Youxi Luo; Guoquan Sun; Guoqin Mai; Fengfeng Zhou
Journal:  Biomed Res Int       Date:  2015-05-05       Impact factor: 3.411

9.  CSBF/C10orf99, a novel potential cytokine, inhibits colon cancer cell growth through inducing G1 arrest.

Authors:  Wen Pan; Yingying Cheng; Heyu Zhang; Baocai Liu; Xiaoning Mo; Ting Li; Lin Li; Xiaojing Cheng; Lianhai Zhang; Jiafu Ji; Pingzhang Wang; Wenling Han
Journal:  Sci Rep       Date:  2014-10-29       Impact factor: 4.379

10.  Improved Variable Selection Algorithm Using a LASSO-Type Penalty, with an Application to Assessing Hepatitis B Infection Relevant Factors in Community Residents.

Authors:  Pi Guo; Fangfang Zeng; Xiaomin Hu; Dingmei Zhang; Shuming Zhu; Yu Deng; Yuantao Hao
Journal:  PLoS One       Date:  2015-07-27       Impact factor: 3.240

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