Literature DB >> 24239018

Comprehending renin inhibitor's binding affinity using structure-based approaches.

Govindan Subramanian1, Shashidhar N Rao.   

Abstract

The performance of several structure-based design (SBD) approaches in predicting the binding affinity of diverse small molecule inhibitors co-crystallized to human renin was assessed to ascertain the modeling tool and method of choice required when dealing with structure-based lead optimization projects. Most of the SBD approaches investigated here were able to provide qualitative guidance, but quantitative accuracy as well as decisive discrimination between [in]actives is still not within reach. Such an outcome suggests that the current methods need improvement to capture the overall physics of the binding phenomenon for consistent applications in a lead optimization setting.
Copyright © 2013 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  3D-QSAR; In silico modeling; MD simulation; MM-GB/SA; Renin inhibitor

Mesh:

Substances:

Year:  2013        PMID: 24239018     DOI: 10.1016/j.bmcl.2013.10.044

Source DB:  PubMed          Journal:  Bioorg Med Chem Lett        ISSN: 0960-894X            Impact factor:   2.823


  2 in total

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