| Literature DB >> 24239018 |
Govindan Subramanian1, Shashidhar N Rao.
Abstract
The performance of several structure-based design (SBD) approaches in predicting the binding affinity of diverse small molecule inhibitors co-crystallized to human renin was assessed to ascertain the modeling tool and method of choice required when dealing with structure-based lead optimization projects. Most of the SBD approaches investigated here were able to provide qualitative guidance, but quantitative accuracy as well as decisive discrimination between [in]actives is still not within reach. Such an outcome suggests that the current methods need improvement to capture the overall physics of the binding phenomenon for consistent applications in a lead optimization setting.Entities:
Keywords: 3D-QSAR; In silico modeling; MD simulation; MM-GB/SA; Renin inhibitor
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Year: 2013 PMID: 24239018 DOI: 10.1016/j.bmcl.2013.10.044
Source DB: PubMed Journal: Bioorg Med Chem Lett ISSN: 0960-894X Impact factor: 2.823