Literature DB >> 24236604

Linear and Poisson models for genetic evaluation of tick resistance in cross-bred Hereford x Nellore cattle.

D R Ayres1, R J Pereira, A A Boligon, F F Silva, F S Schenkel, V M Roso, L G Albuquerque.   

Abstract

Cattle resistance to ticks is measured by the number of ticks infesting the animal. The model used for the genetic analysis of cattle resistance to ticks frequently requires logarithmic transformation of the observations. The objective of this study was to evaluate the predictive ability and goodness of fit of different models for the analysis of this trait in cross-bred Hereford x Nellore cattle. Three models were tested: a linear model using logarithmic transformation of the observations (MLOG); a linear model without transformation of the observations (MLIN); and a generalized linear Poisson model with residual term (MPOI). All models included the classificatory effects of contemporary group and genetic group and the covariates age of animal at the time of recording and individual heterozygosis, as well as additive genetic effects as random effects. Heritability estimates were 0.08 ± 0.02, 0.10 ± 0.02 and 0.14 ± 0.04 for MLIN, MLOG and MPOI models, respectively. The model fit quality, verified by deviance information criterion (DIC) and residual mean square, indicated fit superiority of MPOI model. The predictive ability of the models was compared by validation test in independent sample. The MPOI model was slightly superior in terms of goodness of fit and predictive ability, whereas the correlations between observed and predicted tick counts were practically the same for all models. A higher rank correlation between breeding values was observed between models MLOG and MPOI. Poisson model can be used for the selection of tick-resistant animals.
© 2013 Blackwell Verlag GmbH.

Entities:  

Keywords:  Generalized linear model; model comparison; validation test

Mesh:

Year:  2013        PMID: 24236604     DOI: 10.1111/jbg.12036

Source DB:  PubMed          Journal:  J Anim Breed Genet        ISSN: 0931-2668            Impact factor:   2.380


  7 in total

1.  Resistance status of ticks (Acari; Ixodidae) to amitraz and cypermethrin acaricides in Isoka District, Zambia.

Authors:  Jackson Muyobela; Philip Obed Yobe Nkunika; Enala Tembo Mwase
Journal:  Trop Anim Health Prod       Date:  2015-08-27       Impact factor: 1.559

2.  Bayesian GWAS and network analysis revealed new candidate genes for number of teats in pigs.

Authors:  L L Verardo; F F Silva; L Varona; M D V Resende; J W M Bastiaansen; P S Lopes; S E F Guimarães
Journal:  J Appl Genet       Date:  2014-08-08       Impact factor: 3.240

3.  Genotype by environment interaction for tick resistance of Hereford and Braford beef cattle using reaction norm models.

Authors:  Rodrigo R Mota; Robert J Tempelman; Paulo S Lopes; Ignacio Aguilar; Fabyano F Silva; Fernando F Cardoso
Journal:  Genet Sel Evol       Date:  2016-01-14       Impact factor: 4.297

4.  General Methods for Evolutionary Quantitative Genetic Inference from Generalized Mixed Models.

Authors:  Pierre de Villemereuil; Holger Schielzeth; Shinichi Nakagawa; Michael Morrissey
Journal:  Genetics       Date:  2016-09-02       Impact factor: 4.562

5.  Genetic parameters for tick counts across months for different tick species and anatomical locations in South African Nguni cattle.

Authors:  N O Mapholi; A Maiwashe; O Matika; V Riggio; C Banga; M D MacNeil; V Muchenje; K Nephawe; K Dzama
Journal:  Trop Anim Health Prod       Date:  2017-07-08       Impact factor: 1.559

6.  A comparison of nonlinear mixed models and response to selection of tick-infestation on lambs.

Authors:  Panya Sae-Lim; Lise Grøva; Ingrid Olesen; Luis Varona
Journal:  PLoS One       Date:  2017-03-03       Impact factor: 3.240

7.  Revealing new candidate genes for reproductive traits in pigs: combining Bayesian GWAS and functional pathways.

Authors:  Lucas L Verardo; Fabyano F Silva; Marcos S Lopes; Ole Madsen; John W M Bastiaansen; Egbert F Knol; Mathew Kelly; Luis Varona; Paulo S Lopes; Simone E F Guimarães
Journal:  Genet Sel Evol       Date:  2016-02-01       Impact factor: 4.297

  7 in total

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