Literature DB >> 24225887

Isotopic signatures of N2O produced by ammonia-oxidizing archaea from soils.

Man-Young Jung1, Reinhard Well2, Deullae Min3, Anette Giesemann2, Soo-Je Park4, Jong-Geol Kim1, So-Jeong Kim1, Sung-Keun Rhee1.   

Abstract

N2O gas is involved in global warming and ozone depletion. The major sources of N2O are soil microbial processes. Anthropogenic inputs into the nitrogen cycle have exacerbated these microbial processes, including nitrification. Ammonia-oxidizing archaea (AOA) are major members of the pool of soil ammonia-oxidizing microorganisms. This study investigated the isotopic signatures of N2O produced by soil AOA and associated N2O production processes. All five AOA strains (I.1a, I.1a-associated and I.1b clades of Thaumarchaeota) from soil produced N2O and their yields were comparable to those of ammonia-oxidizing bacteria (AOB). The levels of site preference (SP), δ(15)N(bulk) and δ(18)O -N2O of soil AOA strains were 13-30%, -13 to -35% and 22-36%, respectively, and strains MY1-3 and other soil AOA strains had distinct isotopic signatures. A (15)N-NH4(+)-labeling experiment indicated that N2O originated from two different production pathways (that is, ammonia oxidation and nitrifier denitrification), which suggests that the isotopic signatures of N2O from AOA may be attributable to the relative contributions of these two processes. The highest N2O production yield and lowest site preference of acidophilic strain CS may be related to enhanced nitrifier denitrification for detoxifying nitrite. Previously, it was not possible to detect N2O from soil AOA because of similarities between its isotopic signatures and those from AOB. Given the predominance of AOA over AOB in most soils, a significant proportion of the total N2O emissions from soil nitrification may be attributable to AOA.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 24225887      PMCID: PMC3996685          DOI: 10.1038/ismej.2013.205

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  33 in total

Review 1.  Nitric oxide reductases in bacteria.

Authors:  J Hendriks; A Oubrie; J Castresana; A Urbani; S Gemeinhardt; M Saraste
Journal:  Biochim Biophys Acta       Date:  2000-08-15

2.  Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR.

Authors:  Torsten Ochsenreiter; Drazenka Selezi; Achim Quaiser; Liza Bonch-Osmolovskaya; Christa Schleper
Journal:  Environ Microbiol       Date:  2003-09       Impact factor: 5.491

3.  Cultivation of autotrophic ammonia-oxidizing archaea from marine sediments in coculture with sulfur-oxidizing bacteria.

Authors:  Byoung-Joon Park; Soo-Je Park; Dae-No Yoon; Stefan Schouten; Jaap S Sinninghe Damsté; Sung-Keun Rhee
Journal:  Appl Environ Microbiol       Date:  2010-09-24       Impact factor: 4.792

4.  On the distinction between nitroxyl and nitric oxide using nitronyl nitroxides.

Authors:  Uri Samuni; Yuval Samuni; Sara Goldstein
Journal:  J Am Chem Soc       Date:  2010-06-23       Impact factor: 15.419

5.  Enrichment and characterization of an autotrophic ammonia-oxidizing archaeon of mesophilic crenarchaeal group I.1a from an agricultural soil.

Authors:  Man-Young Jung; Soo-Je Park; Deullae Min; Jin-Seog Kim; W Irene C Rijpstra; Jaap S Sinninghe Damsté; Geun-Joong Kim; Eugene L Madsen; Sung-Keun Rhee
Journal:  Appl Environ Microbiol       Date:  2011-10-14       Impact factor: 4.792

6.  Distinguishing nitrous oxide production from nitrification and denitrification on the basis of isotopomer abundances.

Authors:  R L Sutka; N E Ostrom; P H Ostrom; J A Breznak; H Gandhi; A J Pitt; F Li
Journal:  Appl Environ Microbiol       Date:  2006-01       Impact factor: 4.792

7.  Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea.

Authors:  C B Walker; J R de la Torre; M G Klotz; H Urakawa; N Pinel; D J Arp; C Brochier-Armanet; P S G Chain; P P Chan; A Gollabgir; J Hemp; M Hügler; E A Karr; M Könneke; M Shin; T J Lawton; T Lowe; W Martens-Habbena; L A Sayavedra-Soto; D Lang; S M Sievert; A C Rosenzweig; G Manning; D A Stahl
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-26       Impact factor: 11.205

8.  Measurement of the oxygen isotopic composition of nitrate in seawater and freshwater using the denitrifier method.

Authors:  K L Casciotti; D M Sigman; M Galanter Hastings; J K Böhlke; A Hilkert
Journal:  Anal Chem       Date:  2002-10-01       Impact factor: 6.986

9.  Nitrogen-15 and oxygen-18 characteristics of nitrous oxide: a global perspective.

Authors:  K R Kim; H Craig
Journal:  Science       Date:  1993-12-17       Impact factor: 47.728

10.  Hoeflea halophila sp. nov., a novel bacterium isolated from marine sediment of the East Sea, Korea.

Authors:  Man-Young Jung; Kee-Sun Shin; Suyeon Kim; So-Jeong Kim; Soo-Je Park; Jong-Geol Kim; In-Tae Cha; Mi-Na Kim; Sung-Keun Rhee
Journal:  Antonie Van Leeuwenhoek       Date:  2013-01-12       Impact factor: 2.271

View more
  27 in total

1.  A Method for Cell Culture and Maintenance of Ammonia-Oxidizing Archaea in Agar Stab.

Authors:  Yeon-Jin Chu; Jin-Young Lee; So-Ra Shin; Geun-Joong Kim
Journal:  Indian J Microbiol       Date:  2015-05-23       Impact factor: 2.461

2.  Interactions between Thaumarchaea, Nitrospira and methanotrophs modulate autotrophic nitrification in volcanic grassland soil.

Authors:  Anne Daebeler; Paul L E Bodelier; Zheng Yan; Mariet M Hefting; Zhongjun Jia; Hendrikus J Laanbroek
Journal:  ISME J       Date:  2014-05-23       Impact factor: 10.302

3.  Is biochar-manure co-compost a better solution for soil health improvement and N2O emissions mitigation?

Authors:  Yinghong Yuan; Huaihai Chen; Wenqiao Yuan; David Williams; John T Walker; Wei Shi
Journal:  Soil Biol Biochem       Date:  2017       Impact factor: 7.609

4.  Biogeography of Planktonic and Benthic Archaeal Communities in a Subtropical Eutrophic Estuary of China.

Authors:  Anyi Hu; Liyuan Hou; Chang-Ping Yu
Journal:  Microb Ecol       Date:  2015-03-25       Impact factor: 4.552

Review 5.  The history of aerobic ammonia oxidizers: from the first discoveries to today.

Authors:  Maria Monteiro; Joana Séneca; Catarina Magalhães
Journal:  J Microbiol       Date:  2014-06-28       Impact factor: 3.422

6.  Changing roles of ammonia-oxidizing bacteria and archaea in a continuously acidifying soil caused by over-fertilization with nitrogen.

Authors:  He Song; Zhao Che; Wenchao Cao; Ting Huang; Jingguo Wang; Zhaorong Dong
Journal:  Environ Sci Pollut Res Int       Date:  2016-03-10       Impact factor: 4.223

7.  Malonic semialdehyde reductase from the archaeon Nitrosopumilus maritimus is involved in the autotrophic 3-hydroxypropionate/4-hydroxybutyrate cycle.

Authors:  Julia Otte; Achim Mall; Daniel M Schubert; Martin Könneke; Ivan A Berg
Journal:  Appl Environ Microbiol       Date:  2014-12-29       Impact factor: 4.792

8.  Pathways and key intermediates required for obligate aerobic ammonia-dependent chemolithotrophy in bacteria and Thaumarchaeota.

Authors:  Jessica A Kozlowski; Michaela Stieglmeier; Christa Schleper; Martin G Klotz; Lisa Y Stein
Journal:  ISME J       Date:  2016-02-16       Impact factor: 10.302

9.  Year-Round Shotgun Metagenomes Reveal Stable Microbial Communities in Agricultural Soils and Novel Ammonia Oxidizers Responding to Fertilization.

Authors:  Luis H Orellana; Joanne C Chee-Sanford; Robert A Sanford; Frank E Löffler; Konstantinos T Konstantinidis
Journal:  Appl Environ Microbiol       Date:  2018-01-02       Impact factor: 4.792

10.  A mesophilic, autotrophic, ammonia-oxidizing archaeon of thaumarchaeal group I.1a cultivated from a deep oligotrophic soil horizon.

Authors:  Man-Young Jung; Soo-Je Park; So-Jeong Kim; Jong-Geol Kim; Jaap S Sinninghe Damsté; Che Ok Jeon; Sung-Keun Rhee
Journal:  Appl Environ Microbiol       Date:  2014-06       Impact factor: 4.792

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.