Literature DB >> 24222210

DoMosaics: software for domain arrangement visualization and domain-centric analysis of proteins.

Andrew D Moore1, Andreas Held, Nicolas Terrapon, January Weiner, Erich Bornberg-Bauer.   

Abstract

UNLABELLED: DoMosaics is an application that unifies protein domain annotation, domain arrangement analysis and visualization in a single tool. It simplifies the analysis of protein families by consolidating disjunct procedures based on often inconvenient command-line applications and complex analysis tools. It provides a simple user interface with access to domain annotation services such as InterProScan or a local HMMER installation, and can be used to compare, analyze and visualize the evolution of domain architectures.
AVAILABILITY AND IMPLEMENTATION: DoMosaics is licensed under theApache License, Version 2.0, and binaries can be freely obtained from www.domosaics.net.

Mesh:

Substances:

Year:  2013        PMID: 24222210     DOI: 10.1093/bioinformatics/btt640

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  21 in total

1.  Aquerium: A web application for comparative exploration of domain-based protein occurrences on the taxonomically clustered genome tree.

Authors:  Ogun Adebali; Igor B Zhulin
Journal:  Proteins       Date:  2016-11-13

Review 2.  The language of the protein universe.

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Journal:  Curr Opin Genet Dev       Date:  2015-11-03       Impact factor: 5.578

3.  [Application of selectively thinning of free anterolateral thigh flap in repair of heel skin and soft tissue defect].

Authors:  Qian Li; Haitao Xiao; Ying Cen
Journal:  Zhongguo Xiu Fu Chong Jian Wai Ke Za Zhi       Date:  2018-03-15

4.  The Rise and Fall of TRP-N, an Ancient Family of Mechanogated Ion Channels, in Metazoa.

Authors:  Andreas Schüler; Gregor Schmitz; Abigail Reft; Suat Özbek; Ulrich Thurm; Erich Bornberg-Bauer
Journal:  Genome Biol Evol       Date:  2015-06-22       Impact factor: 3.416

5.  Acinetobacter baumannii Virulence Is Mediated by the Concerted Action of Three Phospholipases D.

Authors:  Julia Stahl; Holger Bergmann; Stephan Göttig; Ingo Ebersberger; Beate Averhoff
Journal:  PLoS One       Date:  2015-09-17       Impact factor: 3.240

6.  Domain similarity based orthology detection.

Authors:  Tristan Bitard-Feildel; Carsten Kemena; Jenny M Greenwood; Erich Bornberg-Bauer
Journal:  BMC Bioinformatics       Date:  2015-05-13       Impact factor: 3.169

7.  LacSubPred: predicting subtypes of Laccases, an important lignin metabolism-related enzyme class, using in silico approaches.

Authors:  Tyler Weirick; Sitanshu S Sahu; Ramamurthy Mahalingam; Rakesh Kaundal
Journal:  BMC Bioinformatics       Date:  2014-10-21       Impact factor: 3.169

8.  Origin and Evolution of the Sponge Aggregation Factor Gene Family.

Authors:  Laura F Grice; Marie E A Gauthier; Kathrein E Roper; Xavier Fernàndez-Busquets; Sandie M Degnan; Bernard M Degnan
Journal:  Mol Biol Evol       Date:  2017-05-01       Impact factor: 16.240

9.  Phylogenetic profiles of all membrane transport proteins of the malaria parasite highlight new drug targets

Authors:  January Weiner; Taco W A Kooij
Journal:  Microb Cell       Date:  2016-08-30

Review 10.  The structure of the S-layer of Clostridium difficile.

Authors:  William J Bradshaw; April K Roberts; Clifford C Shone; K Ravi Acharya
Journal:  J Cell Commun Signal       Date:  2017-11-23       Impact factor: 5.782

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