Literature DB >> 24219279

Hitchhiker antigens: inconsistent ChIP results, questionable immunohistology data, and poor antibody performance may have a common factor.

Missag Hagop Parseghian1.   

Abstract

Questionable data and poor antibody performance may have a common factor: antigens "hitchhiking" on the very antibodies designed to target them. Here I focus on histone hitchhikers and their antibodies, given the impact of chromatin immunoprecipitation on our understanding of DNA regulation. Caused by a lack of stringency during antibody purification, hitchhikers will impede important advances in chromatin research and therapeutics derived from that research, if similar circumstances in the study of lupus decades ago are any guide. Evidence of this phenomenon is reviewed, purification modifications for antibody manufacturing are suggested, and a histone hitchhiker detection procedure is provided.

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Year:  2013        PMID: 24219279     DOI: 10.1139/bcb-2013-0059

Source DB:  PubMed          Journal:  Biochem Cell Biol        ISSN: 0829-8211            Impact factor:   3.626


  5 in total

1.  Editorial: Antibody can get it right: confronting problems of antibody specificity and irreproducibility.

Authors:  Agnes Schonbrunn
Journal:  Mol Endocrinol       Date:  2014-09

2.  Divergence in DNA Specificity among Paralogous Transcription Factors Contributes to Their Differential In Vivo Binding.

Authors:  Ning Shen; Jingkang Zhao; Joshua L Schipper; Yuning Zhang; Tristan Bepler; Dan Leehr; John Bradley; John Horton; Hilmar Lapp; Raluca Gordan
Journal:  Cell Syst       Date:  2018-03-28       Impact factor: 10.304

3.  Hidden IgG Antibodies to the Tumor-Associated Thomsen-Friedenreich Antigen in Gastric Cancer Patients: Lectin Reactivity, Avidity, and Clinical Relevance.

Authors:  Oleg Kurtenkov; Kersti Klaamas
Journal:  Biomed Res Int       Date:  2017-02-21       Impact factor: 3.411

4.  HOT or not: examining the basis of high-occupancy target regions.

Authors:  Katarzyna Wreczycka; Vedran Franke; Bora Uyar; Ricardo Wurmus; Selman Bulut; Baris Tursun; Altuna Akalin
Journal:  Nucleic Acids Res       Date:  2019-06-20       Impact factor: 16.971

Review 5.  A ChIP on the shoulder? Chromatin immunoprecipitation and validation strategies for ChIP antibodies.

Authors:  Fiona C Wardle; Haihan Tan
Journal:  F1000Res       Date:  2015-07-13
  5 in total

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